Also it might be worth checking the contents of the conf/httpd.conf file to see if it has correctly populated it with the correct port numbers etc.
If it hasn't, rerun bin/configure.pl with the --clean option to force it to regenerate httpd.conf properly. cheers, Richard [email protected] wrote: > Hi Syed, > > Actually, the host name 'mandolin.caltech.edu' is already in the > /etc/hosts file and the web server works well. I follow your suggestion to > try 127.0.0.1, the same trouble happened. could you give me other > suggestion? > Thank you! > > Dong > > >> Hi Dong, >> >> your apache startup error says it all, the apache server doesnt >> recognise your host name (the one which you are specifying in >> settings.conf). You need to modify the /etc/hosts file on your system >> and then restart apache server. Once done, reconfigure BioMart (only >> perl bin/configure.pl....) and restart your apache. A good test would >> be to put 127.0.0.1 in settings.conf and configure Biomart, restart >> apache and see if you can access the webserver on >> http://127.0.0.1:5430/biomart/martview >> >> Stepwise solution can be seen here: >> >> http://digitaldeviation.com/articles/apache-articles/apache-error-could-not-reliably-determine-servers-fully-qualified-domain-na >> >> Good Luck!, >> Syed >> >> >> >> [email protected] wrote: >>> Hi Syed, >>> >>> here is the output after configure: >>> >>> # perl bin/configure.pl -r conf/spbase_annotation1022_6.xml >>> >>> Do you want to install in API only mode [y/n] [n]: n >>> >>> Checking prerequisites ...[Looks good] >>> >>> APACHE: /usr/sbin/httpd >>> HOST: http://mandolin.caltech.edu >>> PORT: 5430 >>> PROXY: >>> LOCATION: biomart >>> >>> You can change the above configuration by editing >>> "biomart-perl/conf/settings.conf" >>> >>> >>> >>> Got usable Apache in /usr/sbin/httpd, probing for version & ModPerl >>> configuration >>> Have Apache DSO-support and ModPerl library file present, configuring >>> ModPerl in httpd.conf. >>> Libdir /var/www/html/biomart-perl/lib is not in @INC, adding to @INC >>> >>> Processing Cached Registry: >>> /var/www/html/biomart-perl/conf/cachedRegistries/spbase_annotation1022_6.xml.cached >>> >>> # /usr/sbin/httpd -d $PWD -f $PWD/conf/httpd.conf >>> >>> Processing Cached Registry: >>> /var/www/html/biomart-perl/conf/cachedRegistries/spbase_annotation1022_6.xml.cached >>> >>> [Tue Jan 13 10:00:26 2009] [warn] Useless use of AllowOverride in line >>> 131. >>> [Tue Jan 13 10:00:26 2009] [warn] Useless use of AllowOverride in line >>> 139. >>> [Tue Jan 13 10:00:26 2009] [warn] Useless use of AllowOverride in line >>> 158. >>> [Tue Jan 13 10:00:26 2009] [warn] Useless use of AllowOverride in line >>> 169. >>> [Tue Jan 13 10:00:26 2009] [warn] Useless use of AllowOverride in line >>> 185. >>> httpd: Could not reliably determine the server's fully qualified domain >>> name, using mandolin.caltech.edu for ServerName >>> >>> ------------------------------------------------------------------------ >>> attached are the httpd.conf and settings.conf. >>> >>> Thank you very much for your help! >>> >>> Dong >>> >>> >>>> Hi Dong, >>>> >>>> please send me the following: >>>> >>>> - conf/httpd.conf >>>> - on screen output when you run perl bin/configure.pl...... >>>> - conf/settings.conf >>>> >>>> >>>> thanks >>>> Syed >>>> >>>> >>>> [email protected] wrote: >>>> >>>>> Hi Friends: >>>>> >>>>> I successfully set up a mart in one of my machines, then, I moved >>>>> whole >>>>> mart database into another machine, and the configuring ("perl >>>>> bin/configure.pl -r conf/annotation1022_6.xml", "/usr/sbin/httpd -d >>>>> $PWD >>>>> -f $PWD/conf/httpd.conf")seems work, however, when point web browser >>>>> to >>>>> the corresponding URL, I got a error: "Firefox can't establish a >>>>> connection to the server at mandolin.caltech.edu:5430." does this mean >>>>> mart is not portable? do I have to build mart at each machine >>>>> separately? >>>>> or I missed some httpd configuration? >>>>> Thanks! >>>>> >>>>> Dong >>>>> >>>>> >>>>> >>>>> >>>>> >>>>> > > > -- Richard Holland, BSc MBCS Finance Director, Eagle Genomics Ltd M: +44 7500 438846 | E: [email protected] http://www.eaglegenomics.com/
