Hi Syed,
I often have problems with the URL button as the string is not URL
escaped. Perhaps a simple URL-encoding step would fix this problem?
Will
On 2 Feb 2009, at 16:04, Syed Haider wrote:
Got you, the filters I was using was gene entries to be split on
','. however, chromosomal regions have colon in the filter values
which gets treated in java script as array separators, therefore,
lose the original data values and it says 'ARRAY' :) We need to fix
it, thanks for spotting it Olivier.
Cheers
Syed
Olivier Arnaiz wrote:
Hi Syed,
I have tried with 'Multiple Chromosomal Regions' not with the Gene
ID list. Maybe it is different.
I generate this url :
http://www.biomart.org/biomart/martview?VIRTUALSCHEMANAME=default&ATTRIBUTES=hsapiens_gene_ensembl.default.feature_page.ensembl_gene_id
|
hsapiens_gene_ensembl
.default
.feature_page
.ensembl_transcript_id
&FILTERS=hsapiens_gene_ensembl.default.filters.chromosomal_region <http://www.biomart.org/biomart/martview?VIRTUALSCHEMANAME=default&ATTRIBUTES=hsapiens_gene_ensembl.default.feature_page.ensembl_gene_id|hsapiens_gene_ensembl.default.feature_page.ensembl_transcript_id&FILTERS=hsapiens_gene_ensembl.default.filters.chromosomal_region
>."1:10000:1000000:1,2:20000:2000000:1"&VISIBLEPANEL=resultspanel
And I have ARRAY() in the box.
Thanks
Olivier
Le 2 févr. 09 à 16:24, Syed Haider a écrit :
Hi Olivier,
The following I have just generated from URL button and as i paste
it back to browser, i see the 'Gene ID LIST' box populated
correctly. I am not sure if I am with you, please explain.
http://www.biomart.org/biomart/martview?VIRTUALSCHEMANAME=default&ATTRIBUTES=hsapiens_gene_ensembl.default.feature_page.ensembl_gene_id
|
hsapiens_gene_ensembl
.default
.feature_page
.ensembl_transcript_id
&FILTERS=hsapiens_gene_ensembl.default.filters.ensembl_gene_id <http://www.biomart.org/biomart/martview?VIRTUALSCHEMANAME=default&ATTRIBUTES=hsapiens_gene_ensembl.default.feature_page.ensembl_gene_id|hsapiens_gene_ensembl.default.feature_page.ensembl_transcript_id&FILTERS=hsapiens_gene_ensembl.default.filters.ensembl_gene_id
>
."ENSG00000208234
,ENSG00000208238,ENSG00000208231"&VISIBLEPANEL=resultspanel
Thanks.
Syed
Olivier Arnaiz wrote:
Hi all,
When I try a query using multipleValues (ID-list) ... I obtain
the good results.
But after when I paste the url given by the URL button, I have
'ARRAY(...)' in the box "multipleValues".
I think that should be a bug.
Thanks
Olivier
--
Olivier Arnaiz
CGM-CNRS
91198 Gif-sur-Yvette
01 69 82 43 75
ParameciumDB:
http://paramecium.cgm.cnrs-gif.fr/
--
Olivier Arnaiz
CGM-CNRS
91198 Gif-sur-Yvette
01 69 82 43 75
ParameciumDB:
http://paramecium.cgm.cnrs-gif.fr/
---
William Spooner
Visiting Scientist
[email protected]
