Hi Jonathan, Thanks for reporting this problem. Just wondering if your mart is publicly available so that we can try to reproduce the problem on our side. If not, even better, could you send me the configuration XML files of your mart? These files can be generated from MartEditor using "Save All" on the menu.
Best regards, Junjun PS: If you are going to send the XML files, please send to me directly (our mailing list filters out attachments), thaks. ________________________________ From: [email protected] [mailto:[email protected]] On Behalf Of Moore, Jonathan Sent: Thursday, March 12, 2009 7:40 AM To: [email protected] Subject: [mart-dev] Occasional martview bug >From time to time, if we add and remove attributes from a query through >martview, the query will perform fine for a while then will switch to a mode >where it returns the following text instead of the actual 'Results': STREAM gene and expression BioMart','STREAM gene and expression BioMart']]}}} , {'datasetmenu_1':'','datasetmenu_2':'','databasmenu':'','datasetmenu_3':'','schema':''} , '- CHOOSE SCHEMA -', '- CHOOSE DATABASE -', '- CHOOSE DATASET -', '0'); //]]> (STREAM gene and expression BioMart is the name of our mart being interrogated). The most common time it happens which I have noticed is on clicking Results after removing some dimension attributes from a query. This is accompanied by the following message in the apache log: Argument "" isn't numeric in numeric gt (>) at //Volumes/RAID1/xraid/Users/jaymoore/BioMart/biomart-perl/conf/templates/default/summarypanel.ttc line 25. Once martview is in this state it will not return proper results again until 'New' is selected to start again. Sorry for two queries in one day :) Dr. Jay Moore Senior Research Fellow in Bioinformatics -- Warwick Systems Biology Centre Coventry House University of Warwick Coventry CV4 7AL U.K. +44 (0)24 761 50332 http://www2.warwick.ac.uk/fac/sci/systemsbiology/
