Hi,
The new Ensembl marts for release 53 are now live on www.ensembl.org.
The following improvements and modifications have been made:
Mart Builds (all species)
Ensembl mart 53:
* Modifications have been made to the registry so that BiomaRt
users can now connect to host="www.ensembl.org/biomart/martservice"
* Addition of three new species (zebra finch, anole lizard and
sloth)
* Updated the assembly names for Dasypus novemcinctus (dasNov2)
and Loxodonta africana (loxAfr2)
* Corrected biotype internal naming error (structure_biotype now
points to gene_biotype), reported by BioConductor users
* Corrected Refseq DNA predicted internal naming error
(refseq_DNA_predicted attribute is now refseq_dna_predicted), reported
by BioConductor users
* Removed the consequence type (variation feature) attribute
* Added Superfamily protein domain attribute
* Added an RGD symbol filter and attribute
Vega mart 34:
* Corrected biotype internal naming error (structure_biotype now
points to gene_biotype), reported by BioConductor users
Ensembl variation mart 53:
* Removed the consequence type (variation feature) attribute
* Added new "with phenotype data" filter for the variation
annotation information
* Added new variation annotation attributes:
1. Associated gene
2. Associated variant risk allele
3. Risk allele frequency in controls
4. p value
5. Associated variation names
6. Study information
Addition of Reactome, WormBase and PRIDE databases.
Addition of martsoap (see http://www.biomart.org/martservice.html for
more information)
Regards,
Rhoda
Rhoda Kinsella Ph.D.
Ensembl Bioinformatician,
European Bioinformatics Institute (EMBL-EBI),
Wellcome Trust Genome Campus,
Hinxton
Cambridge CB10 1SD,
UK.
