Syed
Until/unless you switch back the live server to use port:80 in the xsd
namespace the following code works...
this sends and receives the correct SOAP messages on the wire - the JAXB
mapping fails to generate the list of Mart objects correctly - but I guess that
is another story :(
(using CXF2.2 wsdl2java generated code)
QName SERVICE_NAME = new QName("http://www.biomart.org/MartServiceSoap";,
"BioMartSoapService");
URL wsdlURL = new URL("http://www.biomart.org/biomart/martwsdl";);
BioMartSoapService ss = new BioMartSoapService(wsdlURL, SERVICE_NAME);
MartServiceSoap port = ss.getBioMartSoapPort();
List<Mart> result;
try {
result= port.getRegistry();
}catch (Excetpion e) { System.out.println(e.getMessage());}
Trevor Paterson PhD
new email [email protected]
Bioinformatics
The Roslin Institute
Edinburgh University
Scotland EH25 9PS
phone +44 (0)131 5274477
http://www.roslin.ed.ac.uk
http://www.comparagrid.org
http://www.thearkdb.org
Please consider the environment before printing this e-mail
The University of Edinburgh is a charitable body, registered in Scotland with
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> -----Original Message-----
> From: Syed Haider [mailto:[email protected]]
> Sent: 26 March 2009 11:54
> To: trevor paterson (RI)
> Cc: trevor paterson (RI); [email protected]; andy law (RI)
> Subject: Re: [mart-dev] portnumbers in target namespaces
>
> Hi Trevor,
>
> glad to hear that its heading in the right direction. Just
> for everyone's clarity, the solution is to type the URL in
> your Java client as :
>
> http://www.biomart.org:80/biomart/martwsdl
>
>
> right ?
>
> please confirm,
> Thanks
> Syed
>
>
> trevor paterson (RI) wrote:
> > Syed
> >
> > I see where my problem was..
> >
> > the port number was a red herring, I needed to be more explicit in
> > referencing the wsdl location when invoking the service
> >
> > I can now invoke a getRegistry request and get the correct response
> > back over the wire
> >
> > the jaxb mappings created by CXF wsdl2java still arent
> converting this to a List of Marts - but that is another story...
> >
> > thanks again
> >
> > Trevor Paterson
> >
> >
> >
> >> -----Original Message-----
> >> From: trevor paterson (RI)
> >
> >> you are correct - removing the port numer from the schem namespace
> >> doesn't fix the problem....
> >>
> >> the package generated by CXF wsdl2java is now named sensibly as --
> >> org.biomart.martservicesoap;
> >>
> >> and the namespace in the SOAP request is given as --
> >>
> >> <ns1:getRegistry
> >> xmlns:ns1="http://martservicesoap.biomart.org"; />
> >>
> >>
> >>
> >> whereas in order to reference the schema ttypes it needs to be
> >> <ns1:getRegistry
> xmlns:ns1="http://www.biomart.org/MartServiceSoap"/>
> >> and I can't work out whther this is configurable....
> >>
> >> the getRegistry service is obviously OK as both Taverna and
> >> http://soapclient.com/soaptest.html can access it, and
> they specify
> >> the schema namespace correctly - see below
> >>
> >> <?xml version="1.0" encoding="UTF-8" standalone="no"?>
> >> <SOAP-ENV:Envelope
> >> xmlns:SOAP-ENV="http://schemas.xmlsoap.org/soap/envelope/";
> >> xmlns:soap="http://schemas.xmlsoap.org/wsdl/soap/";
> >> xmlns:tns="http://www.biomart.org/MartServiceSoap";
> >> xmlns:xsd="http://www.w3.org/2001/XMLSchema";
> >> xmlns:sawsdl="http://www.w3.org/ns/sawsdl";
> >> xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance";
> >>> <SOAP-ENV:Body><mns1:getRegistry
> >> xmlns:mns1="http://www.biomart.org/MartServiceSoap";></mns1:get
> > Registry>
> >> </SOAP-ENV:Body>
> >> </SOAP-ENV:Envelope>
> >>
> >> it also it looks to me like the CXF wsdl2java is not properly
> >> creating the complex Query type required for a
> queryRequest either....
> >>
> >> so maybe I will just resort to posting XML to the service or
> >> construct vanilla SOAP requests without wsdl stub generation
> >>
> >> ta
> >>
> >> trevor
> >>
> >
> >>> -----Original Message-----
> >>> From: Syed Haider [mailto:[email protected]]
> >
> >>> Hi Trevor,
> >>>
> >>> I am not sure if its really the port number.
> >>>
> >>> However, for your testing and convenience, I have removed
> the port
> >>> number (:80) from wsdl and associated xsd from the live server
> >>> (www.biomart.org) - please test against it and see if that helps,
> >>>
> >>>
> >>> Best,
> >>> Syed
> >>>
> >>>
> >>> trevor paterson (RI) wrote:
> >>>> Syed et al
> >>>>
> >>>> I posted the following to the CXF users list....
> >>>>
> >>
> http://www.nabble.com/portnumbers-in-target-namespaces-td22701556.htm
> >> l
> >>>>
> >>>> I am not sure whether (some of) my problems connecting to
> >>> martsoap are caused by this!
> >>>> Do you know if the port number in the namespace is
> >> problematic when
> >>>> autogenerating client code and whether I have to do some
> >>> munging to get round this?
> >>>>
> >>>> CROSS-POST>>
> >>>>
> >>>> I am having problems generating client code from a WSDL,
> >>> which I suspect may be because the WSDL imports a schema
> >> which has a
> >>> targetNamespace which includes a port number.
> >>>> the WSDL types:
> >>>>
> >>>> <types>
> >>>> <xsd:schema>
> >>>> <xsd:import
> >>> namespace="http://www.biomart.org:80/MartServiceSoap";
> >>>> schemaLocation="martxsd" />
> >>>> </xsd:schema>
> >>>> </types>
> >>>>
> >>>> the schema declaration:
> >>>>
> >>>> <xs:schema
> >>>> xmlns:tns="http://www.biomart.org:80/MartServiceSoap";
> >>>> xmlns:xs="http://www.w3.org/2001/XMLSchema";
> >>>> xmlns:sawsdl="http://www.w3.org/ns/sawsdl";
> >>>> targetNamespace="http://www.biomart.org:80/MartServiceSoap";
> >>>> version="1.0">
> >>>>
> >>>> wsdl2java by default generates client code in the package
> >>>> org.biomart._80.martservicesoap
> >>>>
> >>>> a SOAP request generated from client code generated using
> >>> wsdl2java:
> >>>> <soap:Body>
> >>>> <ns1:getRegistry
> >>> xmlns:ns1="http://martservicesoap._80.biomart.org " />
> >>>> </soap:Body>
> >>>>
> >>>> Am I naïve in thinking that xmlns:ns1 should =
> >>> "http://www.biomart.org:80/MartServiceSoap"; in order to match the
> >>> schema namespace for the service?
> >>>> Is the namespace in the SOAP request made on the fly from
> >>> the package name of the code? and therefore is the ":80"
> >>> insurmountable?
> >>>> Is there a way to set the namespaces generated?
> >>>>
> >>>> thanks
> >>>> Trevor Paterson, Roslin Institute
> >>>>
> >>>> <<END CROSS-POST
> >>>>
> >>>>
> >>>> Trevor Paterson PhD
> >>>> new email [email protected]
> >>>> <mailto:[email protected]>
> >>>>
> >>>> Bioinformatics
> >>>> The Roslin Institute
> >>>> Edinburgh University
> >>>> Scotland EH25 9PS
> >>>> phone +44 (0)131 5274477
> >>>> http://www.roslin.ed.ac.uk <http://www.roslin.ed.ac.uk/>
> >>>> http://www.comparagrid.org <http://www.comparagrid.org/>
> >>>> http://www.thearkdb.org <http://www.thearkdb.org/>
> >>>>
> >>>> Please consider the environment before printing this e-mail
> >>>>
> >>>> The University of Edinburgh is a charitable body, registered in
> >>>> Scotland with registration number SC005336 Disclaimer:This
> >>> e-mail and any attachments are confidential and intended
> solely for
> >>> the use of the recipient(s) to whom they are addressed.
> If you have
> >>> received it in error, please destroy all copies and inform
> >> the sender.
>
