Dear Joachim, Could you please send me (not the mart-dev list as it filters out attachments) your configuration files? You can generate those XML files using MartEditor: File => Save All. You will find two files (???.xml and ???.template.xml) being saved in the folder you just chose. Please send me both files.
Best regards, Junjun > -----Original Message----- > From: [email protected] > [mailto:[email protected]] On Behalf Of Joachim Baran > Sent: Wednesday, April 08, 2009 11:47 AM > To: [email protected] > Subject: [mart-dev] Using MartView on vega mart with additional tables > > Hello, > > I am struggling to get the web-interface MartView to display > interesting data for an extended vega mart. > > The extended vega mart is build from the homo sapiens vega > schema with an additional table 'gene_test' that has two > columns 'gene_id' and 'annotation'. During the mart building > process (with MartBuilder), I can see in the dataset view > that the key of the new table is correctly associated with > the gene table. I have then created the mart and after > updating the meta tables using MartEditor I got an additional > choice 'NEW_ATTRIBUTES' besides 'Features', "Sequences' and > 'Structures' for constructing queries in MartView and > MartExplorer. In MartEditor I then dragged and dropped the > 'AttributeGroup: new_attributes' so that it now appears under > 'AttributePage: feature_page'. I ran the mart configuration > again (perl bin/configure.pl ...) and now I can select > 'Annotation 1077' besides other entries (e.g. 'VEGA Gene ID') > in the 'Feature' panel. When I use MartExplorer, everything > works fine, so that I can query the mart and get results > accordingly. However, in MartView I can select the same > checkboxes as in MartExplorer, but I get the following > output: "Validation Error: Attributes from multiple attribute > pages are not allowed". > > Does anyone know what steps need to be undertaken in order to > get the same query results in MartView as I get in > MartExplorer? Is it not possible to arbitrarily move > AttributeGroups and AttributeCollections around in MartEditor? > > Thanks, > Joachim > > -- > B.1079 Michael Smith Building > Faculty of Life Sciences > The University of Manchester > Oxford Road > Manchester > M13 9PT > United Kingdom >
