Hi Julie,
I was wondering if you had managed to make this work? Let us know if you
need more assistance. Also, I'm sending you the tutorial, you may find
it useful to have some examples. However, please keep in mind that this
is just a draft for now.
Regards,
Anthony
Anthony Cros wrote:
Hi Julie,
Before we go deeper into your problem, it appears you didn't specify the
linkName and the name of your importable and exportable (linkName=name
and they have to be the same for both the importable and the
exportable). You must also specify a list of filters in the importable
and a list of attribute in the exportable (that's what the join is going
to happen on). Can you please try to add these and let me know how it goes?
I'm going to see if we can send you the tutorial quickly too.
Thanks and have a great day,
Anthony
PS: if you have problems with English, I can definitely assist you in
French (the only thing is that I'll probably have to translate
everything so everyone can follow)
[email protected] wrote:
Hi,
I've read the 5.1.2.5 paragraph in the documentation to create my
exportables and importables between my datasets called A_THALIANA and
GENE_ONTOLOGY.
Here are my XML configuration files that I've managed to create with
marteditor.
I have no access to the tutorial of Biomart.
I'm terribly sorry but my english must not be that good. I have
managed to create multiple marts, datasets and attributes but I can't
manage to arrange my Biomart Server to get the following structure:
Can you explain to me the all procedure that I need to do to get such
a view.
Also, I don't understand how is my importables/exportables
configuration taken into account by martview?
Thanks for your help,
Julie
------------------------------------------------------
Hi Julie,
No you definitely don't need to have 2 different marts to do this. If
you have too much trouble configuring your datasets, you can send us
your XML configuration files (File-> Save All => creates several XMLs
file) so we can have a look at it.
Have a good day,
Anthony
PS: you cannot attache anything to an email on mart-dev so you would
need to send the attachment in private
[email protected] wrote:
Hi,
I've created my linking datasets but with only one mart.
The left hand side menu of my BioMart server is still the same. Is the
fact of having multiple marts is obligatory?
Thanks again for your answers.
Julie
--------------------------------------------------------
Sure,
Hi Julie, you can find some info on how to do this in the documentation,
p51, the paragraph starting with "Datasets can be linked together...".
The tutorial provides more details (p11 onwards).
Let us know if you need more help!
Cheers,
Anthony
Arek Kasprzyk wrote:
On 18/06/09 11:26 AM, "[email protected]"
<[email protected]>
wrote:
Thanks !
You have perfectly understood what I wanted to do.
The problem is that I do not know how to make sure that my datasets
connect to
importables and exportables.
Is there a specific part on that in the documentation?
Sure, guys - could you point Julie to where to find info on
exportables/importables please? I am pretty sure there is some info
about it
in our documentation under MEditor section. Maybe our tutorial would
help as
well?
Cheers,
A.
Julie
--
*Anthony Cros
*Database/Application Programmer
*Ontario Institute for Cancer Research
*MaRS Centre, South Tower
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