Hi All,
Sorry to disturb, but I'm getting an error which I just can't figure
out when doing a count on one of our Marts...
Here's the URL for the search:
http://www.sanger.ac.uk/htgt/biomart/martview?VIRTUALSCHEMANAME=default&ATTRIBUTES=kermits.default.attributes.sponsor
|kermits.default.attributes.marker_symbol|
kermits
.default
.attributes.status&FILTERS=kermits.default.filters.status_code."GC"|
kermits.default.filters.centre."WTSI"&VISIBLEPANEL=resultspanel
The search works fine and returns results, but when I try to get a
count from this search (I'd like to know the number of genes with this
criteria), the mart throws the following error (both in MartView and
through the APIs):
Query ERROR: caught BioMart::Exception: non-BioMart die(): Can't use
an undefined value as an ARRAY reference at /software/team87/biomart/
biomart-0_7-prod/lib/BioMart/Dataset/TableSet.pm line 911.
To get the count, I'm hitting it via the rest api with the following
xml:
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE Query>
<Query virtualSchemaName="default" formatter="TSV" header="0"
uniqueRows="1" count="1" datasetConfigVersion="0.6">
<Dataset name="kermits" interface="default">
<Filter name="status_code" value="GC"/>
<Filter name="centre" value="WTSI"/>
</Dataset>
</Query>
Any idea what could be the issue here?
Thanks,
Daz
P.S. Forgot to let you all know - our new (preview) Mouse portal at
the Sanger is now running off Biomart: http://www.sanger.ac.uk/mouseportal/
(well, several biomarts really...) It's still in development, and
things can be flaky every now and then, so be gentle! ;)
--
The Wellcome Trust Sanger Institute is operated by Genome Research
Limited, a charity registered in England with number 1021457 and a
company registered in England with number 2742969, whose registered
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