Hi Matthew,
The said problem has been reported to Ensembl team (cc'ed here) already.
They should be able to give us an idea about the ETA of fix. The issue
is with Danio Rerio sequences because of internal misconfiguration in
Ensembl BioMart release 55.
Best,
Syed
Matthew Strand wrote:
Sure thing, here is an XML query that no longer works.
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE Query>
<Query virtualSchemaName = "default" formatter = "FASTA" header = "0"
uniqueRows = "0" count = "" datasetConfigVersion = "0.6" >
<Dataset name = "drerio_gene_ensembl" interface = "default" >
<Filter name = "ensembl_peptide_id" value = "ENSDARP00000069175"/>
<Attribute name = "ensembl_gene_id" />
<Attribute name = "ensembl_transcript_id" />
<Attribute name = "peptide" />
<Attribute name = "description" />
<Attribute name = "external_gene_id" />
<Attribute name = "external_gene_db" />
<Attribute name = "ensembl_peptide_id" />
</Dataset>
</Query>
--
Matthew Strand
[email protected] <mailto:[email protected]>
phone: (626) 524-4449
skype: matstrand
