Hi again!
No, this should have nothing to do with toolkit template files and from
the look of it, your registry is fine. So my understanding of the
problem is that you generated these 2 datasets thanks to MB and MR, but
they do not show in MV. Just to make sure, it does show in MartEditor,
right? You should see a list of 2 datasets when you connect to your DB.
That's probably how you configured them anyway. So the problem is that
it just doesn't show in MV. Does it show none of them, or just one? Do
you have any kind of an error message somewhere (especially when you run
your configure.pl)? Ideally if you could redirect the ouputs of
configure.pl to a file and send it to me, that would be very helpful.
Thanks,
Anthony
Guillaume Collange wrote:
Thanks a lot,
Currently, I have the biomart (martview) server with two datasets:
sequence and feature. All configuration is on default.
I'm using, martbuilder, martrunner and marteditor (to export the marts
configuration).
Following is my registry.xml:
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE MartRegistry>
<MartRegistry>
<virtualSchema name="default">
<MartDBLocation
name= "biomartDev"
displayName = "My database biomart"
databaseType = "mysql"
host = "*******"
port = "3306"
database = "biomartDev"
schema = "biomartDev"
user = "*********"
password = "*********"
visible = "1"
default = ""
includeDatasets = ""
/>
</virtualSchema>
</MartRegistry>
Do I need modify the toolkit template files?
Best regards,
GC.
2009/7/21 Anthony Cros <[email protected]
<mailto:[email protected]>>
Hi Guillaume,
Sure, can you describe what you already have and where you are stuck?
Thanks a lot,
Anthony
Guillaume Collange wrote:
Hi Anthony,
I'm looking for modify the martview to have a multi selecting
dataset like on wormbase site...
Can you help me to do this?
Best regards,
--
Guillaume C
--
*Anthony Cros
*Database/Application Programmer
*Ontario Institute for Cancer Research
*MaRS Centre, South Tower
101 College Street, Suite 600
Toronto, Ontario, Canada M5G 0A3
Tel: 647-260-7974
Toll-free: 1-866-678-6427
www.oicr.on.ca <http://www.oicr.on.ca>
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--
Guillaume Collange
--
*Anthony Cros
*Database/Application Programmer
*Ontario Institute for Cancer Research
*MaRS Centre, South Tower
101 College Street, Suite 600
Toronto, Ontario, Canada M5G 0A3
Tel: 647-260-7974
Toll-free: 1-866-678-6427
www.oicr.on.ca
This message and any attachments may contain confidential and/or
privileged information for the sole use of the intended recipient. Any
review or distribution by anyone other than the person for whom it was
originally intended is strictly prohibited. If you have received this
message in error, please contact the sender and delete all copies.
Opinions, conclusions or other information contained in this message may
not be that of the organization.
