and what do you see in terminal when you do perl bin/configure... with
--clean switch ?
thanks
Syed
Golenetskaya Natalia wrote:
Hi Syed,
Please find below the error_log:
[Thu Nov 26 16:37:39 2009] [notice] SELinux policy enabled; httpd
running as context user_u:system_r:hotplug_t
[Thu Nov 26 16:37:40 2009] [notice] Apache/2.2.3 (Red Hat)
mod_perl/2.0.4 Perl/v5.8.8 configured -- resuming normal operations
[Thu Nov 26 16:37:56 2009] [error] [client 147.210.8.108] Attempt to
serve directory: /cbi/home/golenets/biomart-perl/htdocs/biomart/
Empty compile time value given to use lib
at /cbi/home/golenets/biomart-perl/cgi-bin/martsoap line 66
Empty compile time value given to use lib
at /cbi/home/golenets/biomart-perl/cgi-bin/martsoap line 66
Also, it is my own mart that I created in martj and my registry file is
as follows:
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE MartRegistry>
<MartRegistry>
<virtualSchema name="default" visible="0" default="1">
<MartDBLocation
name = "mamont_term"
displayName = "Mamont Terms"
databaseType = "postgres"
host = "10.0.0.26"
port = "5432"
database = "mamont"
schema = "public"
user = "david"
password = ""
visible = "1"
default = ""
includeDatasets = ""
martUser = ""
/>
</virtualSchema>
</MartRegistry>
Best regards,
Natalia
On Thu, 2009-11-26 at 13:28 +0000, Syed Haider wrote:
Hi Natalia,
could you please have a look at biomart-perl/logs/error_log when you
encounter this error. There must be some sort of clue there about the error.
let me know what it says ?
also, which registry file did you use ? is it your own mart or one of
the default registry files under conf/ ?
thanks
Syed
