Hi Rochak,
In marteditor where you declare the exportable for exon sequences, you
will see OrderBy property. type in the attribute name of rank. Export,
reconfigure and restart. Hopefully that would do the job. If that doesnt
work, try populating the database in a way that rows are ordered by rank.
Best,
Syed
Rochak Neupane wrote:
Hello,
Is it possible to have BioMart display exon sequences in the order of exon rank in transcript?
Right now the sequences are displayed in no particular order.
Below is an example of exon sequences from Danio rerio. Last field on the
header is the exon rank.
ENSDARG00000079210|ENSDART00000114541|4
TAATAAAAAAAATATTTATTACAGCTCAGAACAATGTTTTTTTTTCCTGTTTTATTTGTC
TGTTTATAGGCAAGAAATTATGTAATAAG
ENSDARG00000079210|ENSDART00000114541|1
CTGGACATGGCATTAAATTCAGTTGATGATCAGTATAAGGGATGTACCAAAAAAATGGCA
GATCTGGTGAAAACAAAATATCTGCCGAAGGAACTCAATAACTCTAAATCGTTCAAGGAA
GCTTGGAAAGTGGCTGAAAGATCTTTTAAGAAGCCAGAAAATAACTTGACAAATAATCAT
TCAATTGCCATCTATCTGTACACTGGGTTAAAACTGTTTCGTGATTTCAATAATGCCACT
CATCATGGCAGGCAAAACTACACAAATGAGAAATACGACTGGTATTCACTTCACTTCCTG
TTAACAGAGGCCTTACAGATTCTGAAAACAGCACAAAATAGATGCTTTGATACTTTTCGT
GGTACAAAG
ENSDARG00000079210|ENSDART00000114541|3
CACTGTTCGTTTTGGCTCATTTGCATCTTCCTCTTATATTCGTAACAAAGCAATGTTTTT
TGGAAGTGTGTCTTGTTTTGAGATTCACACTTGTGCAGGTGCTGATATTACTGATTATTC
CATGCTTGATCGTGAGAAAGAGGTGTTGATTCCTCCATATGAGACGTTTAGAGTCACTGA
AACCAAGACAA
ENSDARG00000079210|ENSDART00000114541|2
AATAGATGCTTTGATACTTTTCGTGGTACAAA
Is it something that is configurable in MartEditor?
Thanks,
Rochak
