Dear all,
I don't know much how to express this issue I am having but I will try.
We are developing an application (CING: cing.googlecodes.com) and we
have some routines to test the sanity of our code.
I am developing in python, on a mac book pro with Mac OSX tiger and FINK.
So when we were using matplotlib 0.90.1 and numpy 1.0.4 the routine
below was running fine.
Then I updated all from Fink, having now mtplib 0.98.3 and numpy 1.1.1
and problems started to appear.
I could solve all (e.g. replace verify_intervals()) but one, as shown below.
I don't have much idea at moment how to debug it better, but it seems
that I cannot generate the PDFs because mtplib functions don't guess a
finite number of pages.
I hope someone can give any idea.
Many thanks in advance.
Alan
======================================================================
ERROR: testMoleculePlot (cing.Libs.test.test_NTMoleculePlot.AllChecks)
----------------------------------------------------------------------
Traceback (most recent call last):
File
"/Users/alan/workspace/cingWork/python/cing/Libs/test/test_NTMoleculePlot.py",
line 178, in testMoleculePlot
createPngCopyToo=True )
File "/Users/alan/workspace/cingWork/python/cing/Libs/NTmoleculePlot.py",
line 176, in renderMoleculePlotSet
if ps.hardcopy(fileNameList[r-1]):
File "/Users/alan/workspace/cingWork/python/cing/Libs/NTplot.py",
line 1201, in hardcopy
savefig(fileName)
File "/sw/lib/python2.5/site-packages/matplotlib/pyplot.py", line
342, in savefig
return fig.savefig(*args, **kwargs)
File "/sw/lib/python2.5/site-packages/matplotlib/figure.py", line
964, in savefig
self.canvas.print_figure(*args, **kwargs)
File "/sw/lib/python2.5/site-packages/matplotlib/backend_bases.py",
line 1310, in print_figure
**kwargs)
File "/sw/lib/python2.5/site-packages/matplotlib/backend_bases.py",
line 1204, in print_pdf
return pdf.print_pdf(*args, **kwargs)
File "/sw/lib/python2.5/site-packages/matplotlib/backends/backend_pdf.py",
line 1864, in print_pdf
self.figure.draw(renderer)
File "/sw/lib/python2.5/site-packages/matplotlib/figure.py", line 759, in draw
for a in self.axes: a.draw(renderer)
File "/sw/lib/python2.5/site-packages/matplotlib/axes.py", line 1523, in draw
a.draw(renderer)
File "/sw/lib/python2.5/site-packages/matplotlib/lines.py", line 437, in draw
markerFunc(renderer, gc, tpath, affine.frozen())
File "/sw/lib/python2.5/site-packages/matplotlib/lines.py", line
885, in _draw_plus
path, path_trans)
File "/sw/lib/python2.5/site-packages/matplotlib/backends/backend_pdf.py",
line 1253, in draw_markers
marker, Op.use_xobject)
File "/sw/lib/python2.5/site-packages/matplotlib/backends/backend_pdf.py",
line 451, in output
self.write(fill(map(pdfRepr, data)))
File "/sw/lib/python2.5/site-packages/matplotlib/backends/backend_pdf.py",
line 124, in pdfRepr
raise ValueError, "Can only output finite numbers in PDF"
ValueError: Can only output finite numbers in PDF
----------------------------------------------------------------------
--
Alan Wilter S. da Silva, D.Sc. - CCPN Research Associate
Department of Biochemistry, University of Cambridge.
80 Tennis Court Road, Cambridge CB2 1GA, UK.
>>http://www.bio.cam.ac.uk/~awd28<<
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