I am new to python and when using Matplotlib 0.99.1.1 [Scientific Linux 6.3, Python 2.6] to plot I get the following error:
/usr/lib64/python2.6/site-packages/matplotlib/backends/backend_gtk.py:621: DeprecationWarning: Use the new widget gtk.Tooltip self.tooltips = gtk.Tooltips() This is when the program reaches: plt.show() Where plt is the matplotlib.pyplot. Prior to this point of the code I am able to produce pdf files of the figure by using plt.savefig(fname). Reading other online comments I have tried to update Matplotlib. First I installed the dependences via sudo yum-builddep python-matplotlib Then: sudo yum install matplotlib This then tells me that I have the latest version of matplotlib and therefore does nothing. There are more recent versions available from the Matplotlib website. I tried to install the latest version after unpacking the tar.gz file. After using the command: sudo python setup.py install I get the message below ending with error: command 'gcc' failed with exit status 1 Can anyone suggest a way to install the latest matplotlib or stop the message I get with using plt.show()? Jonathan basedirlist is: ['/usr/local', '/usr', 'usr/lib64'] ============================================================================ BUILDING MATPLOTLIB matplotlib: 1.2.1 python: 2.6.6 (r266:84292, Jun 18 2012, 09:57:52) [GCC 4.4.6 20110731 (Red Hat 4.4.6-3)] platform: linux2 REQUIRED DEPENDENCIES numpy: 1.4.1 freetype2: 9.22.3 OPTIONAL BACKEND DEPENDENCIES libpng: 1.2.49 Tkinter: Tkinter: 73770, Tk: 8.5, Tcl: 8.5 * Guessing the library and include directories for * Tcl and Tk because the tclConfig.sh and * tkConfig.sh could not be found and/or parsed. Gtk+: gtk+: 2.18.9, glib: 2.22.5, pygtk: 2.16.0, pygobject: 2.20.0 Mac OS X native: no Qt: no Qt4: Qt: 4.6.2, PyQt4: 4.7.4 PySide: no Cairo: 1.8.6 OPTIONAL DATE/TIMEZONE DEPENDENCIES dateutil: 1.4.1 pytz: 2010h OPTIONAL USETEX DEPENDENCIES dvipng: no ghostscript: 8.70 latex: 3.141592 pdftops: 0.12.4 [Edit setup.cfg to suppress the above messages] ============================================================================ pymods ['pylab'] packages ['matplotlib', 'matplotlib.backends', 'matplotlib.backends.qt4_editor', 'matplotlib.projections', 'matplotlib.testing', 'matplotlib.testing.jpl_units', 'matplotlib.tests', 'mpl_toolkits', 'mpl_toolkits.mplot3d', 'mpl_toolkits.axes_grid', 'mpl_toolkits.axes_grid1', 'mpl_toolkits.axisartist', 'matplotlib.sphinxext', 'matplotlib.tri', 'matplotlib.delaunay'] running install running build running build_py copying lib/matplotlib/mpl-data/matplotlibrc -> build/lib.linux-x86_64-2.6/matplotlib/mpl-data running build_ext building 'matplotlib.backends._backend_agg' extension gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -Iusr/lib64/include -Iusr/lib64/python2.6/include -Iusr/lib64/python2.6/site-packages/include -I/usr/lib64/python2.6/site-packages/numpy/core/include -I/usr/local/include -I/usr/include -I. -I/usr/lib64/python2.6/site-packages/numpy/core/include -Isrc -Iagg24/include -I. -I/usr/lib64/python2.6/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/local/include -I/usr/include -I. -I/usr/include/python2.6 -c agg24/src/agg_trans_affine.cpp -o build/temp.linux-x86_64-2.6/agg24/src/agg_trans_affine.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -Iusr/lib64/include -Iusr/lib64/python2.6/include -Iusr/lib64/python2.6/site-packages/include -I/usr/lib64/python2.6/site-packages/numpy/core/include -I/usr/local/include -I/usr/include -I. -I/usr/lib64/python2.6/site-packages/numpy/core/include -Isrc -Iagg24/include -I. -I/usr/lib64/python2.6/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/local/include -I/usr/include -I. -I/usr/include/python2.6 -c agg24/src/agg_bezier_arc.cpp -o build/temp.linux-x86_64-2.6/agg24/src/agg_bezier_arc.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -Iusr/lib64/include -Iusr/lib64/python2.6/include -Iusr/lib64/python2.6/site-packages/include -I/usr/lib64/python2.6/site-packages/numpy/core/include -I/usr/local/include -I/usr/include -I. -I/usr/lib64/python2.6/site-packages/numpy/core/include -Isrc -Iagg24/include -I. -I/usr/lib64/python2.6/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/local/include -I/usr/include -I. -I/usr/include/python2.6 -c agg24/src/agg_curves.cpp -o build/temp.linux-x86_64-2.6/agg24/src/agg_curves.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -Iusr/lib64/include -Iusr/lib64/python2.6/include -Iusr/lib64/python2.6/site-packages/include -I/usr/lib64/python2.6/site-packages/numpy/core/include -I/usr/local/include -I/usr/include -I. -I/usr/lib64/python2.6/site-packages/numpy/core/include -Isrc -Iagg24/include -I. -I/usr/lib64/python2.6/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/local/include -I/usr/include -I. -I/usr/include/python2.6 -c agg24/src/agg_vcgen_dash.cpp -o build/temp.linux-x86_64-2.6/agg24/src/agg_vcgen_dash.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -Iusr/lib64/include -Iusr/lib64/python2.6/include -Iusr/lib64/python2.6/site-packages/include -I/usr/lib64/python2.6/site-packages/numpy/core/include -I/usr/local/include -I/usr/include -I. -I/usr/lib64/python2.6/site-packages/numpy/core/include -Isrc -Iagg24/include -I. -I/usr/lib64/python2.6/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/local/include -I/usr/include -I. -I/usr/include/python2.6 -c agg24/src/agg_vcgen_stroke.cpp -o build/temp.linux-x86_64-2.6/agg24/src/agg_vcgen_stroke.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -Iusr/lib64/include -Iusr/lib64/python2.6/include -Iusr/lib64/python2.6/site-packages/include -I/usr/lib64/python2.6/site-packages/numpy/core/include -I/usr/local/include -I/usr/include -I. -I/usr/lib64/python2.6/site-packages/numpy/core/include -Isrc -Iagg24/include -I. -I/usr/lib64/python2.6/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/local/include -I/usr/include -I. -I/usr/include/python2.6 -c agg24/src/agg_image_filters.cpp -o build/temp.linux-x86_64-2.6/agg24/src/agg_image_filters.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -Iusr/lib64/include -Iusr/lib64/python2.6/include -Iusr/lib64/python2.6/site-packages/include -I/usr/lib64/python2.6/site-packages/numpy/core/include -I/usr/local/include -I/usr/include -I. -I/usr/lib64/python2.6/site-packages/numpy/core/include -Isrc -Iagg24/include -I. -I/usr/lib64/python2.6/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/local/include -I/usr/include -I. -I/usr/include/python2.6 -c src/mplutils.cpp -o build/temp.linux-x86_64-2.6/src/mplutils.o In file included from /usr/include/python2.6/pyconfig.h:6, from /usr/include/python2.6/Python.h:8, from src/mplutils.h:18, from src/mplutils.cpp:6: /usr/include/python2.6/pyconfig-64.h:1034:1: warning: "_POSIX_C_SOURCE" redefined In file included from /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c ++/4.4.6/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c ++/4.4.6/x86_64-redhat-linux/bits/c++config.h:1687, from /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c ++/4.4.6/iostream:39, from src/mplutils.cpp:3: /usr/include/features.h:162:1: warning: this is the location of the previous definition In file included from /usr/include/python2.6/pyconfig.h:6, from /usr/include/python2.6/Python.h:8, from src/mplutils.h:18, from src/mplutils.cpp:6: /usr/include/python2.6/pyconfig-64.h:1043:1: warning: "_XOPEN_SOURCE" redefined In file included from /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c ++/4.4.6/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c ++/4.4.6/x86_64-redhat-linux/bits/c++config.h:1687, from /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c ++/4.4.6/iostream:39, from src/mplutils.cpp:3: /usr/include/features.h:164:1: warning: this is the location of the previous definition gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -Iusr/lib64/include -Iusr/lib64/python2.6/include -Iusr/lib64/python2.6/site-packages/include -I/usr/lib64/python2.6/site-packages/numpy/core/include -I/usr/local/include -I/usr/include -I. -I/usr/lib64/python2.6/site-packages/numpy/core/include -Isrc -Iagg24/include -I. -I/usr/lib64/python2.6/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/local/include -I/usr/include -I. -I/usr/include/python2.6 -c src/agg_py_transforms.cpp -o build/temp.linux-x86_64-2.6/src/agg_py_transforms.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -Iusr/lib64/include -Iusr/lib64/python2.6/include -Iusr/lib64/python2.6/site-packages/include -I/usr/lib64/python2.6/site-packages/numpy/core/include -I/usr/local/include -I/usr/include -I. -I/usr/lib64/python2.6/site-packages/numpy/core/include -Isrc -Iagg24/include -I. -I/usr/lib64/python2.6/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/local/include -I/usr/include -I. -I/usr/include/python2.6 -c CXX/cxxsupport.cxx -o build/temp.linux-x86_64-2.6/CXX/cxxsupport.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -Iusr/lib64/include -Iusr/lib64/python2.6/include -Iusr/lib64/python2.6/site-packages/include -I/usr/lib64/python2.6/site-packages/numpy/core/include -I/usr/local/include -I/usr/include -I. -I/usr/lib64/python2.6/site-packages/numpy/core/include -Isrc -Iagg24/include -I. -I/usr/lib64/python2.6/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/local/include -I/usr/include -I. -I/usr/include/python2.6 -c CXX/IndirectPythonInterface.cxx -o build/temp.linux-x86_64-2.6/CXX/IndirectPythonInterface.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -Iusr/lib64/include -Iusr/lib64/python2.6/include -Iusr/lib64/python2.6/site-packages/include -I/usr/lib64/python2.6/site-packages/numpy/core/include -I/usr/local/include -I/usr/include -I. -I/usr/lib64/python2.6/site-packages/numpy/core/include -Isrc -Iagg24/include -I. -I/usr/lib64/python2.6/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/local/include -I/usr/include -I. -I/usr/include/python2.6 -c CXX/cxx_extensions.cxx -o build/temp.linux-x86_64-2.6/CXX/cxx_extensions.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -Iusr/lib64/include -Iusr/lib64/python2.6/include -Iusr/lib64/python2.6/site-packages/include -I/usr/lib64/python2.6/site-packages/numpy/core/include -I/usr/local/include -I/usr/include -I. -I/usr/lib64/python2.6/site-packages/numpy/core/include -Isrc -Iagg24/include -I. -I/usr/lib64/python2.6/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/local/include -I/usr/include -I. -I/usr/include/python2.6 -c CXX/cxxextensions.c -o build/temp.linux-x86_64-2.6/CXX/cxxextensions.o gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -DPY_ARRAY_UNIQUE_SYMBOL=MPL_ARRAY_API -DPYCXX_ISO_CPP_LIB=1 -I/usr/local/include -I/usr/include -Iusr/lib64/include -Iusr/lib64/python2.6/include -Iusr/lib64/python2.6/site-packages/include -I/usr/lib64/python2.6/site-packages/numpy/core/include -I/usr/local/include -I/usr/include -I. -I/usr/lib64/python2.6/site-packages/numpy/core/include -Isrc -Iagg24/include -I. -I/usr/lib64/python2.6/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/local/include -I/usr/include -I. -I/usr/include/python2.6 -c src/backend_agg.cpp -o build/temp.linux-x86_64-2.6/src/backend_agg.o In file included from src/backend_agg.cpp:42: src/file_compat.h:4:32: error: numpy/npy_3kcompat.h: No such file or directory In file included from src/backend_agg.cpp:42: src/file_compat.h: In function ‘int npy_PyFile_CloseFile(PyObject*)’: src/file_compat.h:125: warning: deprecated conversion from string constant to ‘char*’ src/backend_agg.cpp: In member function ‘Py::Object RendererAgg::write_rgba(const Py::Tuple&)’: src/backend_agg.cpp:2040: error: ‘npy_PyFile_OpenFile’ was not declared in this scope src/backend_agg.cpp:2050: error: ‘npy_PyFile_Dup’ was not declared in this scope src/backend_agg.cpp:2054: error: ‘npy_PyFile_DupClose’ was not declared in this scope src/backend_agg.cpp:2064: error: ‘npy_PyFile_DupClose’ was not declared in this scope error: command 'gcc' failed with exit status 1 ------------------------------------------------------------------------------ This SF.net email is sponsored by Windows: Build for Windows Store. http://p.sf.net/sfu/windows-dev2dev _______________________________________________ Matplotlib-users mailing list Matplotlib-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/matplotlib-users