Hi all guys, I am back to the same issue again. At the moment I am not able
to reazlize where does matplotlib configure script find that my version of
numpy is 1.4.1?
On Tue, Nov 12, 2013 at 4:20 PM, Nemanja Savic <vlasi...@gmail.com> wrote:
> I see. But is there any other way to cope with this x server problem and
> multiple figures plotting?
>
>
> On Tue, Nov 12, 2013 at 3:21 PM, Benjamin Root <ben.r...@ou.edu> wrote:
>
>>
>>
>>
>> On Tue, Nov 12, 2013 at 7:37 AM, Nemanja Savic <vlasi...@gmail.com>wrote:
>>
>>> Hi all guys,
>>>
>>> I am using RHEL6 and I am ploting figures throughout my project, so I
>>> wanted some workaroung blocking show() function call. I have found few
>>> solutions that use multiprocessing, so finally i finished with this:
>>>
>>> pool.map(plot_graph, c)
>>>
>>> and
>>>
>>> def plot_graph(*args):
>>> plt.figure(args[0][2])
>>> plt.bar(args[0][1][:-1], args[0][0], width=1)
>>> plt.show()
>>>
>>> But when I have more than one figure the following error occures:
>>>
>>>
>>> /usr/lib64/python2.6/site-packages/matplotlib/backends/backend_gtk.py:621:
>>> DeprecationWarning: Use the new widget gtk.Tooltip
>>> self.tooltips = gtk.Tooltips()
>>> /usr/lib64/python2.6/site-packages/matplotlib/backends/backend_gtk.py:621:
>>> DeprecationWarning: Use the new widget gtk.Tooltip
>>> self.tooltips = gtk.Tooltips()
>>> [xcb] Unknown sequence number while processing queue
>>> [xcb] Most likely this is a multi-threaded client and XInitThreads has
>>> not been called
>>> [xcb] Aborting, sorry about that.
>>> python: xcb_io.c:273: poll_for_event: Assertion
>>> `!xcb_xlib_threads_sequence_lost' failed.
>>> runner.py: Fatal IO error 0 (Success) on X server :0.0.
>>>
>>> Since my version of matplolib doesnt support blocking = false solution,
>>> I wanted to install new version. For that I installed new version of numpy
>>> but when i run python setup.py build in matplolib foldet i get following:
>>>
>>> Edit setup.cfg to change the build options
>>>
>>> BUILDING MATPLOTLIB
>>> matplotlib: yes [1.3.1]
>>> python: yes [2.6.6 (r266:84292, May 27 2013, 05:35:12)
>>> [GCC
>>> 4.4.7 20120313 (Red Hat 4.4.7-3)]]
>>> platform: yes [linux2]
>>>
>>> REQUIRED DEPENDENCIES AND EXTENSIONS
>>> numpy: yes [version 1.8.0]
>>> dateutil: yes [using dateutil version 1.4.1]
>>> tornado: yes [tornado was not found. It is required for
>>> the
>>> WebAgg backend. pip/easy_install may attempt to
>>> install it after matplotlib.]
>>> pyparsing: yes [pyparsing was not found. It is required for
>>> mathtext support. pip/easy_install may attempt to
>>> install it after matplotlib.]
>>> pycxx: yes [Couldn't import. Using local copy.]
>>> libagg: yes [pkg-config information for 'libagg' could
>>> not
>>> be found. Using local copy.]
>>> freetype: yes [version 9.22.3]
>>> png: yes [version 1.2.49]
>>>
>>> OPTIONAL SUBPACKAGES
>>> sample_data: yes [installing]
>>> toolkits: yes [installing]
>>> tests: yes [nose 0.11.1 or later is required to run the
>>> matplotlib test suite]
>>>
>>> OPTIONAL BACKEND EXTENSIONS
>>> macosx: no [Mac OS-X only]
>>> qt4agg: yes [installing, Qt: 4.6.2, PyQt4: 4.6.2]
>>> gtk3agg: no [Requires pygobject to be installed.]
>>> gtk3cairo: no [Requires pygobject to be installed.]
>>> gtkagg: yes [installing, Gtk: 2.18.9 pygtk: 2.16.0]
>>> tkagg: yes [installing, version 73770]
>>> wxagg: yes [installing, version 2.8.12.0]
>>> gtk: yes [installing, Gtk: 2.18.9 pygtk: 2.16.0]
>>> agg: yes [installing]
>>> cairo: yes [installing, version 1.8.6]
>>> windowing: no [Microsoft Windows only]
>>>
>>> OPTIONAL LATEX DEPENDENCIES
>>> dvipng: yes [version 1.14]
>>> ghostscript: yes [version 8.70]
>>> latex: yes [version 3.1415926]
>>> pdftops: no
>>>
>>> Traceback (most recent call last):
>>> File "setup.py", line 268, in <module>
>>> **extra_args
>>> File "/usr/lib64/python2.6/distutils/core.py", line 113, in setup
>>> _setup_distribution = dist = klass(attrs)
>>> File "build/bdist.linux-x86_64/egg/setuptools/dist.py", line 221, in
>>> __init__
>>> File "build/bdist.linux-x86_64/egg/setuptools/dist.py", line 245, in
>>> fetch_build_eggs
>>> File "build/bdist.linux-x86_64/egg/pkg_resources.py", line 592, in
>>> resolve
>>> plugin_projects.sort() # scan project names in alphabetic order
>>> pkg_resources.VersionConflict: (numpy 1.4.1
>>> (/usr/lib64/python2.6/site-packages), Requirement.parse('numpy>=1.5'))
>>>
>>> When I run python and check numpy version it is indeed 1.8.0, but
>>> matplotlib buils script somehow founded older one.
>>>
>>>
>>> I would be really happy if somebody can help me overcome problem with
>>> many figures.
>>>
>>> Best and cheers
>>>
>>>
>> The issue is rather complex, and it is a very difficult one to solve on
>> our end. What is happening is that in order to build matplotlib from
>> source, you need to compile against the numpy headers at build-time.
>> Unfortunately, python packaging being what it is, there is difficulty in
>> making sure that the version of numpy that will be installed is the version
>> used for the build. You seem to have numpy installed both at the system
>> level and possibly at the user level. If possible, I would try removing
>> numpy from your system level (and that likely means removing any other
>> installed package that depends on it, and reinstalling via source).
>>
>> Ben Root
>>
>
>
>
> --
> Nemanja Savić
>
--
Nemanja Savić
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