Aaron,
I am interested in being able to perform a simultaneous alignment of all of
the fully sequenced Pseudomonas spp. Attempts with previous versions of
Mauve have been unsuccessful, apparently due to the 32 bit addressing limit.
However, I have access to a Mac G5-based cluster with 8 Gbytes/node. How
difficult would it be to produce a 64 bit version of Mauve for the G5?
By the way, the recently released progressive version works great and
appears to be significantly faster when aligning the three fully sequenced
pathovars of P. syringae. The new search features are extremely helpful.
Dave Schneider
Computational biologist
Pseudomonas syringae systems biology group
USDA Agricultural Research Service
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