I have been using Mauve in linux for quite a while with no problems, but after not running an alignment for several months, my linux installation no longer works, I can start up Mauve (2.1) and the initial screen opens without issue. When I select File ->align or align with progressive mauve, the second window opens but with nothing inside. I did update my linux system from Ubuntu 7.04 to 7.10 recently, and Java updated from java 1.5.011 to java 1.5.015. I tried out Mauve 2.2 and still the same issue. Has this happened to anyone else?
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