Hi there, I currently have 9 scaffolds (about 4.5Mb) in my draft genome and would like to use Mauve Contigs Mover to order these scaffolds. My reference sequence (about 7Mb in gbk file) is from a close-related organism. I put all 9 scaffolds in one fasta file. The content of the file is as following:
>Scaffold1 atttg....... >Scaffold2 ttgcggtacc..... >Scaffold3 aaattggatc..... The output of my "scaffold_contigs.tab" is as following: Ordered Contigs type label contig strand left_end right_end contig [1,4540734] chromosome forward 1 4540734 >From this result, it seems likely that all 9 scaffolds have been merged into one contig during the run. I can not obtain the information regarding the scaffold order in genome. Is there anyone can help me to solve this problem? Thanks, Hao-Ping ------------------------------------------------------------------------------ Let Crystal Reports handle the reporting - Free Crystal Reports 2008 30-Day trial. Simplify your report design, integration and deployment - and focus on what you do best, core application coding. Discover what's new with Crystal Reports now. http://p.sf.net/sfu/bobj-july _______________________________________________ Mauve-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/mauve-users
