Hello, I've aligned a few chlamydial genomes in GenBank format. When I use the Export Orthologs function I get the two files I'm supposed to get, the one with the positions of the orthologs in each genome, and the one that also includes the sequences. Unfortunately, the sequences do not correspond with the position stated in the header. For example, this is the sequences of one of the first group of orthologs: >0:266-1267:TC_0001 + tactgttctgaaggagatgagtttgctggagcttctttagccttttcacgacgataagctagatactaagctctttgatt ataccaaagttcactagattaaaccggataaaaagaatttcttccaagtccttaagctcttctttatgggtcatacggac ctcatatgtctacctcaaatctatggtatagatctcttaatctttctgagacagaatatcccgattttcgccaataggaa aagggacaatatctcctagtcttttttctagttaagcctcgtatacgtagcgtaggcatattgtaacaaacatctcctta agtcctttagttttttagaaaaggggttgacacacactaatcactatatcgaaatctaggaaaatgctgatcaccagtgc taccgtaaaaaatgttgttacttcacaatttactgctttcgcaagcgcatatacctctatagcgttgtaacgtacgtctt taccctcgcctataacaacgaggttcgctatactacctaccctctcaagccgtataagctcttttttacctagtctaccc gaaacaattatgtccttaagagagaatatcgcgtttcatacgtagaatgaacataccaggcaaatctctacgagaaagaa gcgtaggagttagacccctatttgccgttatagtttacctaggacggttacaagctcttcgaaacgaacttacggccgat ctacttctcctccctcgtctataccattactatttcggacgacccaaaataaatctacaatagtactttcgagttcttac atgcgtagaaggtcatcaacggatagttcagtcacctcttataagatactaataccggcggtcagacgtacctaccaatt catttcttcctcgatagagcctcagaaacaatcgttaatttgctcgaccccgatgccgatattaatcgatacgttgaggt acccaaaatcttaccgatcgatctctgcgagaaggaaaaattcctttttcaagaaact
This gene (266-1267:TC_0001) when I look it up on EMBL is different from the sequences above. What is it that I'm doing wrong? Am I miss interpreting something? Thanks in advances, Tomas Duffy ------------------------------------------------------------------------------ Download Intel® Parallel Studio Eval Try the new software tools for yourself. Speed compiling, find bugs proactively, and fine-tune applications for parallel performance. See why Intel Parallel Studio got high marks during beta. http://p.sf.net/sfu/intel-sw-dev _______________________________________________ Mauve-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/mauve-users
