Hi Evan,

On Wed, 2010-04-21 at 10:42 -0400, Snitkin, Evan (NIH/NHGRI) [F] wrote: 
> I was wondering if anyone knew of a way to have mauve output a snps and 
> ortholog output file from the command line, instead of having to use the gui.
> 

There's no way to do that with the Mauve 2.3.1 release.  It would be a
pretty straightforward feature to add though, and potentially very
useful.  I'll try to get it implemented in the next few days and contact
you off-list about testing it out.

Cheers,
-Aaron



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