Dear Mauve support, I'm trying to align two Drosophila genomes with mauve on a linux computer, and got a "caught signal 11" message, before Mauve quit and exited with no output. What caused this error? Is it something to do with the input format? If it helps, one of the genome data files has 14,730 contigs (fasta records) and the other has 15 chromosomes (fasta records). Both files have gap sections with NNNNN in the sequence (from scaffolding). The error occurred while loading the 14,730 contig file.
Will mauve work on fly genomes, or are they too large? For reference, I've got 16 GB of RAM on the computer. Here's the shell window text: ########## data2/joel/mauve_2.3.1 ./progressiveMauve --output=Sim_sech_mauve_aln.xmfa ../bwa-0.5.6/genomes/D_simulans.fa ../bwa-0.5.6/genomes/D_sechellia.fa Storing raw sequence at /tmp/rawseq24182.000 Sequence loaded successfully. ../bwa-0.5.6/genomes/D_simulans.fa 142420719 base pairs. Storing raw sequence at /tmp/rawseq24182.001 Sequence loaded successfully. ../bwa-0.5.6/genomes/D_sechellia.fa 166577145 base pairs. Using weight 19 mers for initial seeds Creating sorted mer list Create time was: 85 seconds. Creating sorted mer list Caught signal 11 Cleaning up and exiting! Temporary files deleted. ########## Thanks for your time, -Joel. Joel McManus Postdoctoral Fellow Graveley Lab University of Connecticut Health Center Department of Genetics and Developmental Biology 263 Farmington Ave ARB Rm E3053 Farmington, CT 06030 phone: 860 679 2092
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