Hello, Thank you very much for the hint, the gbk files i downloaded were indeed without sequence...Mauve now runs smoothly... Thanks a lot!
On May 3, 2010, at 11:25 PM, Aaron Darling wrote: > Hi Anastasia: > > On Mon, 2010-05-03 at 14:10 -0700, Anastasia Gioti wrote: > >> terminate called after throwing an instance of >> 'std::ios_base::failure' >> what(): failed mapping file: Invalid argument >> Exited with error code: 134 >> > > Although this error message may seem cryptic, you are almost certainly > right that it's happening due to an error with the GenBank file. The > console log refers to a genbank file called > crassa_notfull_sequences.gbk. I believe the problem is that the file > does not actually contain any DNA sequence, even though it probably > contains annotation and amino acid sequence. Can you check with a > text > editor? The DNA is usually near the bottom of a genbank entry. The > NCBI web site has a bad habit of not downloading the DNA sequence by > default, so if you obtain your data through their web interface be > sure > to add the option to download the sequence. > > If that doesn't solve the problem, can you please send me the .gbk > file > (off-list) so I can have a closer look at what might be going wrong? > > Cheers, > -Aaron > > > > ------------------------------------------------------------------------------ > _______________________________________________ > Mauve-users mailing list > Mauve-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/mauve-users Anastasia Gioti Post-Doc, Evolutionary Biology Department Uppsala University Norbyvägen 18D, SE-75236 UPPSALA anastasia.gi...@ebc.uu.se Tel: +46-18-471-2837 Fax:+46-18-471-6310 ------------------------------------------------------------------------------ _______________________________________________ Mauve-users mailing list Mauve-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/mauve-users
