Hello. We have seen this bug before, and believe it's a threading issue. While we resolve it, reloading the 7th alignment will allow you to view the last successful reorder, and if you'd like to continue running the reorder, you may start the process again with the fastas from this directory, and it will continue.
Hope that helps Anna Rissman ----- Original Message ----- From: sepideh <[email protected]> Date: Tuesday, December 21, 2010 8:01 pm Subject: [Mauve-users] contig mover_error message-unknown source To: [email protected] > Hello there, > > Thanks a lot for Mauve, it's great. > I'm running the contig mover (MCM: version 2.3.1) on a draft fungal > genome closely related to the reference. After seven iterative > alignment of MCM I get the following error message: > "Exception in thread "Thread-43" java.lang.Error: Inconsistency > error". Attached is the Mauve Console showing the error message and my > system is Mac os 10.6. > > Basically, MCM stops at this point and doesn't finish the contig > orders. Have you ever faced this problem and do you know how to > resolve it. > > Any help or guidance is appreciated, > > Thanks, > Sepideh > > Hello there, > > Thanks a lot for Mauve, it's great. > > I'm running the contig mover (MCM: version 2.3.1) on a draft fungal > genome closely related to the reference. After seven iterative > alignment of MCM I get the following error message: > "Exception in thread "Thread-43" java.lang.Error: Inconsistency > error". Attached is the Mauve Console showing the error message and my > system is Mac os 10.6. > > > Basically, MCM stops at this point and doesn't finish the contig > orders. Have you ever faced this problem and do you know how to > resolve it. > > > Any help or guidance is appreciated, > > > Thanks, > Sepideh > ------------------------------------------------------------------------------ > Forrester recently released a report on the Return on Investment > (ROI) of > Google Apps. They found a 300% ROI, 38%-56% cost savings, and break-even > within 7 months. Over 3 million businesses have gone Google with > Google Apps: > an online email calendar, and document program that's accessible from > your > browser. Read the Forrester report: http://p.sf.net/sfu/googleapps-sfnew > > _______________________________________________ > Mauve-users mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/mauve-users > ------------------------------------------------------------------------------ Learn how Oracle Real Application Clusters (RAC) One Node allows customers to consolidate database storage, standardize their database environment, and, should the need arise, upgrade to a full multi-node Oracle RAC database without downtime or disruption http://p.sf.net/sfu/oracle-sfdevnl _______________________________________________ Mauve-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/mauve-users
