On 27/01/2011 05:59, Joseph Fass wrote: > I've done this with Velvet scaffolds, that contain long runs of N's > between contigs. Are the newbler scaffolds straight fasta? Or are > there dashes or other odd characters in there? Lower case (not sure if > that'd cause a problem for MAUVE)? Hi Joe,
Thanks for the response. I've realised the problem; I was supplying a Genbank file to MAUVE containing scaffolds. However, the file suffix didn't specify '.gbk' and I think MAUVE assumed it was an invalid FASTA file (because of all the Genbank text). It would be great if MAUVE could detect GenBank files (e.g. by looking for 'LOCUS' at the start of the file, or similar). But I now realise I must give Genbank files the appropriate suffix. Cheers, Nick ------------------------------------------------------------------------------ Special Offer-- Download ArcSight Logger for FREE (a $49 USD value)! Finally, a world-class log management solution at an even better price-free! Download using promo code Free_Logger_4_Dev2Dev. Offer expires February 28th, so secure your free ArcSight Logger TODAY! http://p.sf.net/sfu/arcsight-sfd2d _______________________________________________ Mauve-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/mauve-users
