After running "./progressiveMauve --output=/scratch/yang/nmr_real.xmfa
/scratch/yang/data/Cavia_porcellus.cavPor3.63.dna_rm.toplevel.fa
/scratch/yang/data/Mus_musculus.NCBIM37.63.dna_rm.toplevel.fa
/home/yl176/research/data/nmr_contigs.fa"
I ran into the following problem:
Writing guide tree to /tmp/guide_tree26756.000
reading tree...
initializing alignment tree...
matches[matchI - 1]->Length(0) = 2723219641
matches[matchI - 1]->LeftEnd(0) = 1
oh skeethockey mushrooms
matches[0]->Length(0) = 2723219641
matches[0]->LeftEnd(0) = 1
oh skeethockey mushrooms too
matches[matchI - 1]->Length(0) = 2716965481
matches[matchI - 1]->LeftEnd(0) = 1
oh skeethockey mushrooms
matches[0]->Length(0) = 2716965481
matches[0]->LeftEnd(0) = 1
oh skeethockey mushrooms too
matches[matchI - 1]->Length(0) = 2313569411
matches[matchI - 1]->LeftEnd(0) = 1
oh skeethockey mushrooms
matches[0]->Length(0) = 2313569411
matches[0]->LeftEnd(0) = 1
oh skeethockey mushrooms too
terminate called after throwing an instance of 'std::ios_base::failure'
what(): failed mapping file: Invalid argument
Constructing seed occurrence lists for repeat detection
Does anyone know what went wrong?
Thanks a ton,
Yang
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