Dear, I did a genome comparison of species A and species B (genekank files) with progressiveMauve.
Now I will compare the A genes with the B genes. For Example In the viewer gene A100 looks identical to gene B103. Gene A100 from A species has the coordinates (100101-100200, 100301-100500) Gene B105 from B species has the coordinates (104101-104200, 104301-104500) How can I compare the coordinates? How can the genome specific coordinates of each species transfered to "alignment" coordinates. Thanks for your help with best regards, Martin -- Dr. Martin Münsterkötter MIPS - Institute of Bioinformatics and Systems Biology Helmholtz Zentrum München German Research Center for Environmental Health (GmbH) Ingolstädter Landstr. 1 85764 Neuherberg Germany http://www.helmholtz-muenchen.de/mips Phone: +49-89-3187-3579 Fax: +49-89-3187-3585 Helmholtz Zentrum München Deutsches Forschungszentrum für Gesundheit und Umwelt (GmbH) Ingolstädter Landstr. 1 85764 Neuherberg www.helmholtz-muenchen.de Aufsichtsratsvorsitzende: MinDir´in Bärbel Brumme-Bothe Geschäftsführer: Prof. Dr. Günther Wess und Dr. Nikolaus Blum Registergericht: Amtsgericht München HRB 6466 USt-IdNr: DE 129521671 ------------------------------------------------------------------------------ BlackBerry® DevCon Americas, Oct. 18-20, San Francisco, CA http://p.sf.net/sfu/rim-devcon-copy2 _______________________________________________ Mauve-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/mauve-users
