We've seen this in one case. But we've seen apparently random errors with
many progressive mauve runs that stop the run after some number of
alignments (not a constant number) ... this would of course make the
alignment results different, even if Mauve is behaving entirely
deterministically.
~Joe
2011/11/3 Kirstin Hanks <[email protected]>
> Hi,
>
> Does anyone know whether the order in which i enter sequences for aligning
> with progressive mauve would or should alter the outcome?
>
> Cheers,
> Kirstin
>
>
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--
Joseph Fass
Bioinformatics Programmer
UC Davis Bioinformatics Core
joseph.fass -at- gmail.com (professional)
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