Wow, that was fast! Thanks for the suggestions. We'll evaluate these right away. Very much appreciated!
Peter On 9/20/2012 1:55 PM, Munson, Robert wrote: > Peter, > > We align contigs to a related genome with Mauve to hopefully get the > contains in something close to the correct order, then do a first pass > annotation with RAST. > > See http://rast.nmpdr.org/ and the appended pdf. It is my understanding > that RAST is no longer funded but is run through Patric. See > http://www.patricbrc.org/portal/portal/patric/Home > > If you find something easier, ps let me know. > > Bob > Hi Peter > > We have used RATT for the same purpose with limited success. A non-MAUVE > solution but works reasonably well for bacterial genomes. > http://ratt.sourceforge.net/documentation.html > > > Best Regards > Preethi Ramaiya > Senior Bioinformatics Associate -- Peter R. Hoyt, Ph. D. Director, Bioinformatics Certification Graduate Program, Oklahoma State University Department of Biochemistry and Molecular Biology 110FB Henry Bellmon Research Center (Shipping address: 246 Noble Research Center) Stillwater, OK 74078 (405) 744-6206 FAX (405) 744-7799 ------------------------------------------------------------------------------ Got visibility? Most devs has no idea what their production app looks like. Find out how fast your code is with AppDynamics Lite. http://ad.doubleclick.net/clk;262219671;13503038;y? http://info.appdynamics.com/FreeJavaPerformanceDownload.html _______________________________________________ Mauve-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/mauve-users
