Dear all, Since a few weeks ago I'm trying to do something with Mauve that I can't, and I've been searching everywhere with no luck. I'm performing an alignment between two Drosophila genomes using progressiveMauve. Each genome is composed of several scaffolds (each genome in its own multifasta file). The alignment is OK, and I get the alignment, backbone and bbcols files... (by the way, what are the columns in the bbcols file?) BUT I would need get a file with the position of the LCBs on each genome, that is, the start and end position of each LCB refered to each scaffold of each genome. Actually, that information that I need, is shown in the graphical interface, in the bottom-left of the window when you move the cursor through each genome. The best I found is an april-2010 thread where Aaron explain to Ariadna how to generate a LCB boundary file through the programs projectAndStrip/makeBadgerMatrix, but that's not useful for my purposes. Again, I need the start and end position of each LCB refered to each scaffold of each genome. Could anyone guide me on how I could get this file? I would really appreciate any clue... Thaaaaanks!!! Best, Diego
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