Dear all, I know this came up a couple of times in the past, but I don't seem to find a straightforward answer "in lay terms" on how to get from the SNP output of progressiveMauve (using the Windows GUI) to any format that can be used to create a phylogenetic tree or network of SNPs.
A simple, step-by-step guide would be very very much appreciated :-) I am working on about 30 bacterial genomes. If non-Windows scripts are needed, I am able to run a Unix VM. Thanks a lot, Shlomo
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