I ran mauve on windows to generate an alignment of about 20genomes. I used that
alignment on the Linux machine to stripSubsetLCBs. Ireceived the following
error:
Storing raw sequence at /tmp/rawseq7173.000
terminate called after throwing an instance of
'boost::exception_detail::clone_impl<boost::exception_detail::error_info_injector<std::ios_base::failure>>'
what(): failed mapping file: Cannot allocatememory
Aborted (core dumped)
I ran the following command:
/home/Analysis_Tools/mauve_snapshot_2015-02-13/linux-x64/progressi
veMauve
/home/ahaynes/MRPAClonalFrame/stripSubsetLCBs/home/ahaynes/MRPAClonalFrame/MRPA_Alignment_mauve/home/ahaynes/MRPAClonalFrame/MRPA_Alignment_mauve.bbcols
core_alignmen
t.xmfa 500
Could you help me get this working please? Thanks!
Abria mageeabria2...@sbcglobal.net
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