hello I try to extract core_alignement from my alignement.xmfa with stripSubsetLCBs;
stripSubsetLCBs aligement.xmfa alignement.xmfa.bbcols core_alignement.xmfa 500 And in all the core_alignement.xmfa i have a good alignement except for one genome. But when i look at my alignement.xmfa it's good. So stripSubsetLCBs don' work properly. what can i do? Thanks advance. Best karine
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