Hi Taher,
Can you tell us a bit more about the sequences you're trying to align,
and give the command-line you ran to create the alignment?
From the log it looks like you've got a large number of very short
(~400nt?) sequences.
progressiveMauve wasn't really designed for this kind of input, and
while it may work, you're likely to get better results with standard
multiple sequence alignment programs.
The output should be in whatever file was specified with the --output
option on the command-line. Have you checked?
Best,
-Aaron
On Wed, 2016-02-10 at 14:41 +0300, UZ ZAMAN, TAHER wrote:
> We would like to seek your help and guidance in resolving this
> problem. We were using Progressive –Mauve aligner to generate
> multi-fasta alignment files and we got this problem. We were unable to
> get the output files. I’m herewith enclosing the snapshot of the
> screen. Please advise.
>
>
>
> Best regards
>
>
>
> Taher
>
>
>
> Riyadh, Saudi Arabia.
>
>
>
>
>
>
>
>
>
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