Hi Hattie,
There is currently no way to instruct the aligner to only align a
portion of each genome. Extracting the region desired for alignment is
the preferred approach, via script or other means.
Best,
-Aaron
On Fri, 2016-06-10 at 01:24 +0300, Hattie Chung wrote:
> Hi Mauve users,
>
> I would like to visualize the neighboring genes of a particular gene
> across ~30 genomes.
> Since whole-genome alignment is computationally intensive, I'd like
> to specify and anchor the alignment for one particular gene, and not
> align the rest of the genome. Is this possible with Mauve?
>
> (I thought about writing a script to grab the flanking ~10k bp of the
> gene's homolog in each genome, but Mauve's visualization is quite
> nice and I'd rather not write scripts for making nice graphics.)
>
> Thank you,
> Hattie
> -------------------------------------------------------------------
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--
Aaron E. Darling, Ph.D.
Associate Professor, ithree institute
University of Technology Sydney
Australia
http://darlinglab.org
twitter: @koadman
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What NetFlow Analyzer can do for you? Monitors network bandwidth and traffic
patterns at an interface-level. Reveals which users, apps, and protocols are
consuming the most bandwidth. Provides multi-vendor support for NetFlow,
J-Flow, sFlow and other flows. Make informed decisions using capacity
planning reports. https://ad.doubleclick.net/ddm/clk/305295220;132659582;e
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