Hi all,
Has anyone tried to convert the SNP and/or indel format that Mauve exports
into a VCF-like format? I've aligned assembled genomes to a reference
genome, and would like to predict the effect of various differences, and
tools like snpEff required VCF input. I plan to try to write my own, but I
wondered if anyone's dealt with this before.
Thanks for any advice, leads, etc. ...
~Joe
--
Joseph Fass
Bioinformatics Data Analyst
UC Davis Genome Center - Bioinformatics Core
http://bioinformatics.ucdavis.edu/
jnf...@ucdavis.edu
phone ~ 530.752.2698
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