Dear all,
I'm struggling in a Mauve analysis and wonder if someone could help me.
I'm studying 13 genomes from diff bacteria and I performed a
progressiveMauve alignment from the graphical interface using the last
version of Mauve snapshot for Linux (2015-02-13).
I have as output the follow files: 1. no extension (I use to open the
graphical interface); 2. .backbone; 3. .bbcols ; 4. .guide_tree.
I would like to have the coordinates from LCBs, since I have multiple
genomes and they have up to 900 scaffolds. As example, I would like to an
output such as:
scaffold start end genome strand
* NZ_KB902575.1 1695199 1695311 - *
I checked in the list and saw an answer from Aaron about xmfa2maf but,
since I don't have a .xmfa file I tried it but I got a kinda NT file that
does not have every LCB.
Does anyone know how can I get what I'm looking for?
Thank you in advance.
Best,
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