Looks like a guile/guile-devel version mismatch to me. Your install command failed because there was an existing version.
Instead of "yum install" try "yum update" cheers Manoj Jiha Sung wrote: > Dear MEEP Helper: > > Recently I have been trying to install MEEP and related interfaces into > a Linux(Fedora 7). I followed the instructions in web pages and I think > everything was installed. Summary of my MEEP installation procedure is > listed at the end of this mail. However, when I tested the first example > in the MEEP tutorial page > (http://ab-initio.mit.edu/wiki/index.php/Meep_Tutorial ). I do not get > the right output. I wrote the input, outputs, and error messages below. > Can somebody tell me what is wrong? > > Input file (ex1.ctl); > (reset-meep) > (set! geometry-lattice (make lattice (size 16 8 no-size))) > (set! geometry (list > (make block (center 0 0) (size infinity 1 infinity) > (material (make dielectric (epsilon 12)))))) > (set! source (list > (make source > (src (make continuous-src (frequency 0.15))) > (component Ez) > (center -7 0)))) > (set! pml-layers (list (make pml (thickness 1.0)))) > (set! resolution 10) > (run-until 200 > (at-beginning output-epsilon) > (at-end output-efield-z)) > > Output message: > ----------- > Initializing structure... > Working in 2D dimensions. > block, center = (0,0,0) > size (1e+20,1,1e+20) > axes (1,0,0), (0,1,0), (0,0,1) > dielectric constant epsilon = 12 > time for set_epsilon = 0.0223849 s > ----------- > creating output file "./ex1-eps-000000.00.h5"... > creating output file "./ex1-ez-000200.00.h5"... > run 0 finished at t = 200.0 (4000 timesteps) > Elapsed run time = 0.191832 s > Deprecated error message: > SCM_STRINGP is deprecated. Use scm_is_string instead. > SCM_STRING_LENGTH is deprecated. Use scm_c_string_length instead. > scm_must_malloc is deprecated. Use scm_gc_malloc and scm_gc_free > instead. > SCM_STRING_CHARS is deprecated. See the manual for alternatives. > scm_must_free is deprecated. Use scm_gc_malloc and scm_gc_free > instead. > Outputs: > ex1-eps-000000.00.h5 looks O.K. > ex1-ez-000200.00.h5 shows all 0's (when converted using "h5totxt") > > Thanks in advance. > > Jiha > > > Summary of MEEP installation (Jan. 8 – Jan. 12, 2007) > > For the functions of the programs to be installed, please read the MEEP > installation page. > (http://ab-initio.mit.edu/wiki/index.php/Meep_Installation ) > 1. Installing guile (This installation is not difficult) > In any root directories, > % yum list | grep guile > % yum install guile-devel.x86.64 > % guile --version → It shows guile 1.8.1 is installed > 2. Installing libctl (This installation is not difficult.) > Downloaded “libctl-3.0.2.tar.tar” into /root/Download. > In /root/Download, > % tar –xvf libctl-3.0.2 > % mv libctl-3.0.2 .. > % cd /root/libctl-3.0.2 > % ./configure > (If there comes error messages “Permission denied”, > then “configure” file should be made executable; > % chmod 744 configure > % chmod 744 install-sh ) > % make > % make install > This produced “gen-ctl-io” in /usr/local/bin, > “libctl.a”, “libctlgeom.a”, “libctlgeom.1a”, libctl.la” > in /usr/local/lib > “ctlgeom.h”, “ctl-geom-types.h”, “ctl.h” in > /usr/local/include > “gen-ctl-io.1” in /usr/local/man/man1 > many files in /usr/local/share/libctl/base and > /usr/local/share/libctl/utils > 3. Installing hdf5 (This installation needs care.) > I followed the instructions of SCI institute web page > > (http://software.sci.utah.edu/doc/Installation/Guide/osx/sec.sr_hdf5_build.html > > ). > There are also instructions in CBLFS web pages > (http://cblfs.cross-lfs.org/index.php/HDF5 and > http://cblfs.cross-lfs.org/index.php/H5utils). > % Downloaded “hdf5-1.6.6.tar.gz” into /root/Download > In the /root/Download directory, > % gunzip < hdf5-1.6.6.tat.gz | tar xf > % cd /root/hdf5-1.6.6 > % CC=gcc > % CXX=g++ > % export CC CXX > % ./configure --enable-threadsafe --with-pthread=/usr --prefix=/usr/local > % make all > % make install > This produced files in /usr/local/bin, /usr/local/lib, /usr/local/doc. > Finally, the followings are needed; check if there is a line > /usr/local/lib in > /etc/ld.so.conf and run /sbin/ldconfig. > 4. Installing libpng and libpng-devel > This is needed to install “h5toping” in h5utils package. “libpng” is > usually installed in Linux systems, but the header files need to be > installed through “libpng-devel”. > % yum list | grep libpng > (“libpng.x86_64” was already installed.) > % yum install libpng-devel.x86_64 > 5. Installing h5utils (Once the installations of 3 and 4 are done > correctly, this is simple.) > Downloaded “h5utils-1.10.1.tar.tar” into /root/Downloaded > In the directory, > % tar –xvf h5utils-1.10.1.tar.tar > % mv h5utils-1.10.1 .. > % cd /root/h5utils-1.10.1 > % ./configure > % make > % make install > This installed “h5toping”, “h5totxt”, “h5fromtxt”, “h5tovtk” in > /usr/local/bin. > and many other files in /usr/local/share/h5utils. > 6. Installing BLAS and LAPACK > Downloaded “blas.gz” into /root/Download. > In the directory, the file name is changed to “blas.tgz”. > % gunzip blas.tgz > % tar xf blas.tar > % cd BLAS > % g77 –c –O3 *.f > % ar rv libblas.a *.o > % cp libblas.a /usr/local/lib > Downloaded “lapack.gz” into /root/Download. > In the directory, the file name is changed to “lapack.tgz”. > % gunzip lapack.tgz > % tar xf lapack.tar > % cd lapack-3.1.1 > % cp INSTALL/make.inc.LINUX make.inc > Edit “make.inc” for BLASLIB > (BLASLIB = /usr/local/lib/libblas.a) > % make > % cp lapack_LINUX.a /usr/local/lib /liblapack.a > > 7. Installing Harmiv > Since this is not critical to run MEEP, I did not install it this time. > It can be installed later. Then, the MEEP has to be complied again. > 8. Installing MEEP. > (Once all the required interfaces are installed, installing it is simple.) > Downloaded “meep-0.10.1.tar.tar into /root/Download-xvf > In the directory, > % tar –xvf meep-0.10.1.tar.tar > % mv meep-0.10.1 .. > % cd /root/ meep-0.10.1 > % ./configure > % make > % make install > This produced “meep” in /usr/local/bin, and some files > in /usr/local/include/meep and in /usr/local/share/meep. > This should be ready to run test files in MEEP tutorial > (http://ab-initio.mit.edu/wiki/index.php/Meep_Tutorial ). > > ------------------------------------------------------------------------ > Looking for last minute shopping deals? 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