Sinan,
Thanks, after getting home and taking a fresh look at the issue, I
was able to get it to configure and later compile using:
LIBS='-latlas' ./configure --with-hdf5=/usr/lib
Apparently, the default lapack that comes with Ubuntu is the ATLAS
build. I also had to make sure I had gfortran and not g77 installed,
guile-1.6-dev, and a few other -dev's I was missing. I also had to
build libctl from source as the latest in the Ubuntu repositories is
3.0.2 . Not sure where the zlib issue was coming from, but the
--with-hdf5 string seemed to kill it as well.
For reference:
ldd /usr/local/bin/meep
linux-vdso.so.1 => (0x00007fff9b7fe000)
libguile.so.12 => /usr/lib/libguile.so.12 (0x00007fe69319a000)
libguile-ltdl.so.1 => /usr/lib/libguile-ltdl.so.1 (0x00007fe692f96000)
libdl.so.2 => /lib/libdl.so.2 (0x00007fe692d92000)
libcrypt.so.1 => /lib/libcrypt.so.1 (0x00007fe692b5a000)
libgsl.so.0 => /usr/lib/libgsl.so.0 (0x00007fe692774000)
libharminv.so.2 => /usr/lib/libharminv.so.2 (0x00007fe69256e000)
liblapack.so.3 => /usr/lib/atlas/liblapack.so.3 (0x00007fe691c16000)
libblas.so.3 => /usr/lib/atlas/libblas.so.3 (0x00007fe691278000)
libgfortran.so.2 => /usr/lib/libgfortran.so.2 (0x00007fe690fb9000)
libgcc_s.so.1 => /lib/libgcc_s.so.1 (0x00007fe690dab000)
libfftw3.so.3 => /usr/lib/libfftw3.so.3 (0x00007fe690aee000)
libatlas.so.3 => /usr/lib/libatlas.so.3 (0x00007fe690187000)
libstdc++.so.6 => /usr/lib/libstdc++.so.6 (0x00007fe68fe7c000)
libm.so.6 => /lib/libm.so.6 (0x00007fe68fbfb000)
libc.so.6 => /lib/libc.so.6 (0x00007fe68f899000)
/lib64/ld-linux-x86-64.so.2 (0x00007fe693455000)
liblapack.so.3gf => /usr/lib/liblapack.so.3gf (0x00007fe68eefd000)
libblas.so.3gf => /usr/lib/libblas.so.3gf (0x00007fe68ec83000)
libg2c.so.0 => /usr/lib/libg2c.so.0 (0x00007fe68ea53000)
libpthread.so.0 => /lib/libpthread.so.0 (0x00007fe68e837000)
Thanks again!
-Dave
On Mon, Sep 8, 2008 at 8:58 PM, sinan selcuk <[EMAIL PROTECTED]> wrote:
> Compiling HDF5 as a dynamic lib (or shared), rather than static might work,
> otherwise I couldn't make meep find it.
>
>
> David Cummings real.psyence at gmail.com
> Mon Sep 8 20:15:46 EDT 2008
>
> * Previous message: [Meep-discuss] shift in fft of meep data
> * Messages sorted by: [ date ] [ thread ] [ subject ] [ author ]
>
> Hi All,
> I hate to do this but after banging my head against this off and on
> for a couple weeks I could really use some simple help. I am trying to
> compile 0.20.3 on the latest Ubuntu, after deciding that the 0.2*
> versions had some features I really wanted.
> The big issues are that the ./configure script and associated tests
> are not finding -lhdf5, -lz, and guile-config has issues, all of which
> are installed. For example, the test for zlib fails though I can run
> gcc -lz with the test "confdeps.h" and it compiles and runs fine. Any
> ideas? Happy to attach config.log's or anything else to help hammer
> this out.
> Thanks,
> -Dave
>
> --
> The way that can be named is not the Way.
>
>
>
>
>
>
>
> _______________________________________________
> meep-discuss mailing list
> [email protected]
> http://ab-initio.mit.edu/cgi-bin/mailman/listinfo/meep-discuss
>
--
The way that can be named is not the Way.
_______________________________________________
meep-discuss mailing list
[email protected]
http://ab-initio.mit.edu/cgi-bin/mailman/listinfo/meep-discuss
