I'm trying to figure out related issues, and as far as I can tell, negative
transmission values can occur for a few different reasons. One reason is
just flux passing through a detection volume in a negative direction.
Another reason, in the case of dft flux objects, seems to be due to the
calculation of the fourier transform of the fields in a volume. In my case,
what I am seeing is that the flux in a box over time, which normally drops
to near-zero if I'm using a flux_vol object, retains some significant
non-zero values if I instead use a dft_flux object. The best solution I've
found right now is to output fields or flux values over time and do a
sanity check (for unwanted reflections, inaccuracy due to low resolution,
etc.) by eye.

If I am saying things that are wrong, dumb, ill-informed, etc., I'd love
for someone more knowledgeable to jump in and correct me.


On Fri, Oct 17, 2014 at 12:07 PM, Narendra Honnalli <nvhon...@ncsu.edu>
wrote:

> Yes, I have! For my code I am getting a blend of positive and negative
> values and have a hard time interpreting them or plot the transmission
> spectrum. I will display the code and the output on request.Can anyone
> help me?
>
>
>
>
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