Hey list, I've been unable to load DCM and IMA image files in the last week since I updated MITK from SVN again. ExtApp acts as if it loaded the data successfully, but there's simply nothing visible. The images I load are an animation, but the next frame is always one transversal step deeper. So in 3D view it looks like a cuboid. All the nodes in the data manager are loaded with correct names. The details for one such image look like this for an image that is 2D with more images along the depth axis, when I scroll through transversal in the image navigator (I don't know whether these are default values or correct):
Image (0xe714f70) PixelType: s BitsPerElement: 16 NumberOfComponents: 1 BitsPerComponent: 16 Dimension: 3 Dimensions: 800 600 5 TimeSlicedGeometry: TimeSlicedGeometry (0xe77d0e0) EvenlyTimed: 1 TimeSteps: 1 GetGeometry3D(0): SlicedGeometry3D (0xe713f00) IndexToWorldTransform: Matrix: 1 0 0 0 1 0 0 0 1 Offset: [4.52003e-41, 1.3022e-40, 1.29144e-40] Center: [0, 0, 0] Translation: [4.52003e-41, 1.3022e-40, 1.29144e-40] Inverse: 1 0 0 0 1 0 0 0 1 Scale : 1 1 1 BoundingBox: ( 0,800 0,600 0,5 ) Origin: [4.52003e-41, 1.3022e-40, 1.29144e-40] ImageGeometry: 1 Spacing: [1, 1, 1] TimeBounds: [-3.40282e+38, 3.40282e+38] EvenlySpaced: 1 DirectionVector: [0, 0, 1] Slices: 5 GetGeometry2D(0): PlaneGeometry (0xe77c920) IndexToWorldTransform: Matrix: 1 0 0 0 1 0 0 0 1 Offset: [4.52003e-41, 1.3022e-40, 1.29144e-40] Center: [0, 0, 0] Translation: [4.52003e-41, 1.3022e-40, 1.29144e-40] Inverse: 1 0 0 0 1 0 0 0 1 Scale : 1 1 1 BoundingBox: ( 0,800 0,600 0,1 ) Origin: [4.52003e-41, 1.3022e-40, 1.29144e-40] ImageGeometry: 1 Spacing: [1, 1, 1] TimeBounds: [-3.40282e+38, 3.40282e+38] ScaleFactorMMPerUnitX: 1 ScaleFactorMMPerUnitY: 1 Normal: [0, 0, 1] The messages on the console from launch of ExtApp, loading an image and quitting look like this, for an IMA file: ./bin/ExtApp [Tue Apr 27 16:06:39 2010 0.160] Registering CoreExtObjectFactory... [0.160] CoreObjectFactory c'tor [0.160] CoreExtObjectFactory c'tor [0.160] CoreObjectFactory: registering extra factory of type CoreExtObjectFactory [0.400] Registering DiffusionImagingObjectFactory... [0.400] DiffusionImagingObjectFactory c'tor [0.410] CoreObjectFactory: registering extra factory of type DiffusionImagingObjectFactory [0.410] CoreObjectFactory: registering extra factory of type DiffusionImagingObjectFactory [0.460] QmitkRegisterClasses() [0.470] QmitkExtRegisterClasses() [1.030] [BlueBerry] BlueBerry Workbench ready [1.980] loading image series with prefix and pattern as DICOM... [2.410] The directory /home/eska/Desktop/testdata/Testdaten_Grouls_01 contains the following DICOM Series: [2.410] 1.3.12.2.1107.5.5.2.200809.30000009121516172789000000002.1600800 [2.410] 1.3.12.2.1107.5.5.2.200809.30000009121516172789000000002.17681024 [2.410] 1.3.12.2.1107.5.5.2.200809.30000010011208084151500000016.1600800 [2.410] 1.3.12.2.1107.5.5.2.200809.30000010011208084151500000022.1600800 [2.410] 1.3.12.2.1107.5.5.2.200809.30000010011208084151500000022.17681024 [2.410] Reading series #0: 1.3.12.2.1107.5.5.2.200809.30000009121516172789000000002.1600800 [2.410] /home/eska/Desktop/testdata/Testdaten_Grouls_01/UNBEKANNT.US._.1.2.2010.01.14.14.14.08.703125.30947561.IMA [2.410] /home/eska/Desktop/testdata/Testdaten_Grouls_01/UNBEKANNT.US._.1.3.2010.01.14.14.14.08.703125.30947908.IMA [2.410] /home/eska/Desktop/testdata/Testdaten_Grouls_01/UNBEKANNT.US._.1.4.2010.01.14.14.14.08.703125.30955865.IMA [2.410] /home/eska/Desktop/testdata/Testdaten_Grouls_01/UNBEKANNT.US._.1.5.2010.01.14.14.14.08.703125.30961511.IMA [2.410] /home/eska/Desktop/testdata/Testdaten_Grouls_01/UNBEKANNT.US._.1.6.2010.01.14.14.14.08.703125.30966395.IMA [4.600] Reading series #1: 1.3.12.2.1107.5.5.2.200809.30000009121516172789000000002.17681024 [4.600] /home/eska/Desktop/testdata/Testdaten_Grouls_01/UNBEKANNT.US._.1.1.2010.01.14.14.14.08.703125.30947406.IMA [4.730] Reading series #2: 1.3.12.2.1107.5.5.2.200809.30000010011208084151500000016.1600800 [4.730] /home/eska/Desktop/testdata/Testdaten_Grouls_01/MAUS1_BR1.US._.1.51.2010.01.14.14.17.40.0.34033444.IMA [4.730] /home/eska/Desktop/testdata/Testdaten_Grouls_01/MAUS1_BR1.US._.1.52.2010.01.14.14.17.40.0.34033881.IMA [4.730] /home/eska/Desktop/testdata/Testdaten_Grouls_01/MAUS1_BR1.US._.1.53.2010.01.14.14.17.40.0.34034786.IMA [4.730] /home/eska/Desktop/testdata/Testdaten_Grouls_01/MAUS1_BR1.US._.1.54.2010.01.14.14.17.40.0.34037726.IMA [4.730] /home/eska/Desktop/testdata/Testdaten_Grouls_01/MAUS1_BR1.US._.1.55.2010.01.14.14.17.40.0.34037796.IMA [4.730] /home/eska/Desktop/testdata/Testdaten_Grouls_01/MAUS1_BR1.US._.1.56.2010.01.14.14.17.40.0.34040736.IMA [4.730] /home/eska/Desktop/testdata/Testdaten_Grouls_01/MAUS1_BR1.US._.1.57.2010.01.14.14.17.40.0.34041299.IMA [4.730] /home/eska/Desktop/testdata/Testdaten_Grouls_01/MAUS1_BR1.US._.1.58.2010.01.14.14.17.40.0.34041552.IMA [4.730] /home/eska/Desktop/testdata/Testdaten_Grouls_01/MAUS1_BR1.US._.1.59.2010.01.14.14.17.40.0.34043468.IMA [4.730] /home/eska/Desktop/testdata/Testdaten_Grouls_01/MAUS1_BR1.US._.1.60.2010.01.14.14.17.40.0.34047432.IMA [4.730] /home/eska/Desktop/testdata/Testdaten_Grouls_01/MAUS1_BR1.US._.1.61.2010.01.14.14.17.40.0.34049348.IMA [4.730] /home/eska/Desktop/testdata/Testdaten_Grouls_01/MAUS1_BR1.US._.1.62.2010.01.14.14.17.40.0.34052288.IMA [4.730] /home/eska/Desktop/testdata/Testdaten_Grouls_01/MAUS1_BR1.US._.1.63.2010.01.14.14.17.40.0.34054204.IMA [4.730] /home/eska/Desktop/testdata/Testdaten_Grouls_01/MAUS1_BR1.US._.1.64.2010.01.14.14.17.40.0.34056120.IMA [4.730] /home/eska/Desktop/testdata/Testdaten_Grouls_01/MAUS1_BR1.US._.1.65.2010.01.14.14.17.40.0.34058766.IMA [4.730] /home/eska/Desktop/testdata/Testdaten_Grouls_01/MAUS1_BR1.US._.1.66.2010.01.14.14.17.40.0.34059158.IMA [4.730] /home/eska/Desktop/testdata/Testdaten_Grouls_01/MAUS1_BR1.US._.1.67.2010.01.14.14.17.40.0.34059387.IMA [7.560] Reading series #3: 1.3.12.2.1107.5.5.2.200809.30000010011208084151500000022.1600800 [7.560] /home/eska/Desktop/testdata/Testdaten_Grouls_01/MAUSBR1_10UL.US._.1.2.2010.01.14.14.25.08.46875.34142087.IMA [7.560] /home/eska/Desktop/testdata/Testdaten_Grouls_01/MAUSBR1_10UL.US._.1.3.2010.01.14.14.25.08.46875.34142340.IMA [7.560] /home/eska/Desktop/testdata/Testdaten_Grouls_01/MAUSBR1_10UL.US._.1.4.2010.01.14.14.25.08.46875.34151430.IMA [7.560] /home/eska/Desktop/testdata/Testdaten_Grouls_01/MAUSBR1_10UL.US._.1.5.2010.01.14.14.25.08.46875.34153283.IMA [7.560] /home/eska/Desktop/testdata/Testdaten_Grouls_01/MAUSBR1_10UL.US._.1.6.2010.01.14.14.25.08.46875.34153539.IMA [7.560] /home/eska/Desktop/testdata/Testdaten_Grouls_01/MAUSBR1_10UL.US._.1.7.2010.01.14.14.25.08.46875.34156479.IMA [7.560] /home/eska/Desktop/testdata/Testdaten_Grouls_01/MAUSBR1_10UL.US._.1.8.2010.01.14.14.25.08.46875.34158395.IMA [7.560] /home/eska/Desktop/testdata/Testdaten_Grouls_01/MAUSBR1_10UL.US._.1.9.2010.01.14.14.25.08.46875.34161335.IMA [7.560] /home/eska/Desktop/testdata/Testdaten_Grouls_01/MAUSBR1_10UL.US._.1.10.2010.01.14.14.25.08.46875.34163251.IMA [7.560] /home/eska/Desktop/testdata/Testdaten_Grouls_01/MAUSBR1_10UL.US._.1.11.2010.01.14.14.25.08.46875.34165167.IMA [7.560] /home/eska/Desktop/testdata/Testdaten_Grouls_01/MAUSBR1_10UL.US._.1.12.2010.01.14.14.25.08.46875.34168107.IMA [7.560] /home/eska/Desktop/testdata/Testdaten_Grouls_01/MAUSBR1_10UL.US._.1.13.2010.01.14.14.25.08.46875.34170023.IMA [7.560] /home/eska/Desktop/testdata/Testdaten_Grouls_01/MAUSBR1_10UL.US._.1.14.2010.01.14.14.25.08.46875.34170216.IMA [9.930] Reading series #4: 1.3.12.2.1107.5.5.2.200809.30000010011208084151500000022.17681024 [9.930] /home/eska/Desktop/testdata/Testdaten_Grouls_01/MAUSBR1_10UL.US._.1.1.2010.01.14.14.25.08.46875.34141954.IMA [10.500] [mapper.vr] initializing hardware-accelerated renderer [10.500] [mapper.vr] initializing hardware-accelerated renderer [10.500] [mapper.vr] initializing hardware-accelerated renderer [10.510] [mapper.vr] initializing hardware-accelerated renderer [10.510] [mapper.vr] initializing hardware-accelerated renderer [11.040] [BlueBerry] WorkbenchWindow::Close() Closing workbench... [11.060] [BlueBerry] Saving state to: /home/eska/.ExtApp/.metadata/.plugins/org.blueberry.ui/workbench.xml [11.060] [BlueBerry] WorkbenchWindow::Close() [11.110] [BlueBerry] Window::Close() Clearing tweaklets [11.130] [BlueBerry] WorkbenchWindow::~WorkbenchWindow() I've seen some very short message about a change in the image loading code in the SVN log, are you guys changing something major and this is only temporary? Because I basically can't continue working on my plugin like this. :-/ Thanks for your time, Stefan ------------------------------------------------------------------------------ _______________________________________________ mitk-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/mitk-users
