Hi Frank, I parsed one of my diffusion-files and it looks like this:
Private_0029_1008: 'IMAGE NUM 4' Private_0029_1009: '20090122' Private_0029_1010: [10023x1 uint8] Private_0029_1018: 'MR' Private_0029_1019: '20090122' Private_0029_1020: [80111x1 uint8] Private_0029_1160: 'com' and "0029_1010" contains the following keywords: EchoLinePosition, EchoColumnPosition, EchoPartitionPosition, UsedChannelMask, Actual3DImaPartNumber, ICE_Dims, B_value, Filter1, Filter2, ProtocolSliceNumber, RealDwellTime, PixelFile, PixelFileName, SliceMeasurementDuration, SequenceMask, AcquisitionMatrixText, MeasuredFourierLines, FlowEncodingDirection, FlowVenc, PhaseEncodingDirectionPositive, NumberOfImagesInMosaic, DiffusionGradientDirection, ImageGroup, SliceNormalVector, DiffusionDirectionality, TimeAfterStart, FlipAngle, SequenceName, RepetitionTime, EchoTime, NumberOfAverages, VoxelThickness, VoxelPhaseFOV, VoxelReadoutFOV, VoxelPositionSag, VoxelPositionCor, VoxelPositionTra, VoxelNormalSag, VoxelNormalCor, VoxelNormalTra, VoxelInPlaneRot, ImagePositionPatient, ImageOrientationPatient, PixelSpacing, SliceLocation, SliceThickness, SpectrumTextRegionLabel, Comp_Algorithm, Comp_Blended, Comp_ManualAdjusted, Comp_AutoParam, Comp_AdjustedParam, Comp_JobID, FMRIStimulInfo, FlowEncodingDirectionString, RepetitionTimeEffective, CsiImagePositionPatient, CsiImageOrientationPatient, CsiPixelSpacing, CsiSliceLocation, CsiSliceThickness, OriginalSeriesNumber, OriginalImageNumber, ImaAbsTablePosition, NonPlanarImage, MoCoQMeasure, LQAlgorithm, SlicePosition_PCS, RBMoCoTrans, RBMoCoRot, MultistepIndex, ImaRelTablePosition, ImaCoilString, RFSWDDataType, GSWDDataType, NormalizeManipulated, ImaPATModeText, B_matrix, BandwidthPerPixelPhaseEncode, FMRIStimulLevel, MosaicRefAcqTimes, AutoInlineImageFilterEnabled Only "DiffusionGradientDirection" and "B_value" are used. Could you identify other TAGS in your dataset that exhibit the b-value and gradient information? Do you know of different conventions between different SIEMENS scanners? Best regards Klaus Fritzsche ________________________________________ Von: Frank Blaschke [[email protected]] Gesendet: Dienstag, 13. Juli 2010 11:14 An: Fritzsche Klaus Cc: [email protected] Betreff: Re: AW: [mitk-users] MITK ExtApp Diffusion-Plugin Hi, we use the standart SIEMENS DWI product sequence. We've looked in our DICOM tags: 0029,0010 ---: SIEMENS CSA HEADER 0029,0011 ---: SIEMENS MEDCOM HEADER 0029,0012 ---: SIEMENS MEDCOM HEADER2 0029,1008 ---: IMAGE NUM 4 0029,1009 ---: 20100209 0029,1018 ---: MR 0029,1019 ---: 20100209 0029,1131 ---: 4.0.386076244 0029,1134 ---: DB TO DICOM 0029,1260 ---: com What has to stand in there? best regards Frank > the DICOM import has been tested on SIEMENS-datasets, but it looks > like it is not able to find the correct meta-information in your > datasets. > > The code in > > > Modules/DiffusionImaging/DicomImport/mitkSiemensDicomDiffusionImageHeaderReader.cpp > > checks the private DICOM-tag "0029,1010", do you have a chance to > take a look at the tag in your datasets? > > Hi, > > i wanna use the mitk.gui.qt.diffusionimagin plugin. It include DICOM > Import extension. When I try to use it, i get the following console > output: > > s...@judika:~$ /usr/lib/mitk/bin/ExtApp > [Mon Jul 12 14:02:09 2010 > 0.110] Registering CoreExtObjectFactory... > [0.110] CoreObjectFactory c'tor > [0.110] CoreExtObjectFactory c'tor > [0.110] CoreObjectFactory: registering extra factory of type > CoreExtObjectFactory > [0.260] Registering DiffusionImagingObjectFactory... > [0.260] DiffusionImagingObjectFactory c'tor > [0.260] CoreObjectFactory: registering extra factory of type > DiffusionImagingObjectFactory > [0.260] CoreObjectFactory: registering extra factory of type > DiffusionImagingObjectFactory > [0.270] Registering PlanarFigureObjectFactory... > [0.270] PlanarFigureObjectFactory c'tor > [0.270] CoreObjectFactory: registering extra factory of type > PlanarFigureObjectFactory > [0.330] QmitkRegisterClasses() > [0.340] QmitkExtRegisterClasses() > [0.950] [BlueBerry] BlueBerry Workbench ready > > Image #1/1 Dims 512x512x3 Warning: No B_value in > /home/salz/workspace/MRT-Datensaetze/Data01/MR.1.3.12.2.1107.5.2.13.20566.30000010020907204484300004401 > Probe Tag Starts Stops Time (s) > Directory Parsing 1 1 0.018 > Header Reading 1 1 0.119 > Volume Loading 1 0 0.000 > Aborted > s...@judika:~$ > > Every other files i tried to use ExtApp crashes. Are there special > requirements for DICOM files to use them with Diffusion-Plugin? The > normal way to import them in ExtApp works. > > I use Ubuntu 9.10 > gcc-4.4.1 > CMake-2.8.0 > VTK-5.6.0 > ITK-3.18.0 > Qt-4.5.3 > MITK-svn-2010-07-12 (#24511) > boost-1.43.0 > > Greetings > > Frank > ------------------------------------------------------------------------------ This SF.net email is sponsored by Sprint What will you do first with EVO, the first 4G phone? Visit sprint.com/first -- http://p.sf.net/sfu/sprint-com-first _______________________________________________ mitk-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/mitk-users
