Hi Sascha,

 Partly, this is a "feature" of the ExternalProject module used for the 
superbuild. To avoid confusion, I just removed the MITK_BUILD_org... options 
from the MITK superbuild. Hence, they will not overwrite the values in the 
MITK-build directory anymore.

 However, options which are available both at superbuild level and 
inner-project level will be overwritten when duing a "supberbuild" again. In 
some situations this can be confusing, as would be the other way around (not 
overwriting). Usually, building at superbuild level is only done once at 
initial project set-up.


 *Thank you for your explanation. However, I cannot configure (enable/disable) 
the plugins anymore through cmake. I just pulled the latest template, cmaked it 
(and disabled testing and tutorial stuff) and compiled it as superbuild. 
Afterwards, if I try to configure "AwesomeProject\MITK-superbuild\MITK-build" 
then not even one plugin is visible.

 For comparison I pulled the latest MITK version, cmaked it the same way and 
compiled as superbuild. If I configure MITK-superbuild\MITK-build afterward, I 
see all the plugins.*
 *So, it seems to me that there is still something wrong with the template. Can 
you confirm this?*




2.
 In "startAwesomeApp_release.bat" the last line is "\SandboxApp.exe" which is 
wrong. Should be "AwesomeApp.exe".

 Thanks, I just fixed it.


 *Now in "startAwesomeApp_release.bat" I see "\AwesomeApp.exe". The backslash 
should be removed, too, else MITK does not start using the .bat file on my Win 
7 x64 maschine.*



 Best wishes,
 Klaus
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