Hi Miri,

I'm not really sure, if I got what you really want.

If you want to change the axis of your 3D image according to the cylinder 
surface, you just have to get the geometry of the image by 
mitk::Geometry3D<http://docs.mitk.org/nightly-qt4/classmitk_1_1Geometry3D.html>*
 mitk::BaseData::GetGeometry ( int  t = 0)  and then change this geometry. More 
information you'll find here 
http://docs.mitk.org/nightly-qt4/classmitk_1_1Geometry3D.html

If you are still interested in cutting out swiveled slices, we now have the 
ExtractSliceFilter merged into the master, which needs as input a geometry as 
well, in order to know, which slice should be cut out. 
http://docs.mitk.org/nightly-qt4/classmitk_1_1ExtractSliceFilter.html

In either ways you can use the geometry information of your cylinder surface to 
determine the geometry needed for your image.

Best
Anja

--------------
Dipl.-Inform. Anja Groch
German Cancer Research Center (DKFZ)
Div. Medical and Biological Informatics (E130)
Im Neuenheimer Feld 280
69120 Heidelberg, Germany

Email:  [email protected]<mailto:[email protected]>
Phone:  (+49) 6221/42-3548
Fax:    (+49) 6221/42-2345
http://www.dkfz-heidelberg.de/de/mbi/people/Anja_Groch.html

Von: Miri Trope [mailto:[email protected]]
Gesendet: Mittwoch, 20. Juni 2012 09:24
An: mitk-users
Betreff: [mitk-users] Changing the orthogonal axis orientation due to a surface

Hi all,
I'll to be more specific and comprehensible now:

How can I change the orthogonal axis orientation due to a surface?
Please take a look at the attached picture: I have an input image and a 
cylinder. The upper figures represent before and the lowers after a handy 
swivel. I just rotated the red axis to be in a perpendicular position 
relatively to the cylinder.
How can I develop a filter that gets those two components (image and surface) 
and change the axis's image orientation to be perpendicularly the surface - in 
this way I will be able to browse the slices-slice after slice, and watch 
exactly what around my cylinder surface.
In the literature it's called: probe eye view.

If you know the answer to my question, please detail as much as you can 
(explanation, examples) - I'll very appreciate this.

Best,
Miri
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