Hi Peter, okay then it seems to be really connected to the loading and saving of MITK projects and probably to the property serialization errors. I'd like to ask you if you would open a new bug in our bug tracker system (bugs.mitk.org)? We'll try to reproduce this bug so it would be really helpful if you could isolate and describe a way of reproducing this bug as reliable as possible. We'll have a look at it at our next bugsquashing party (Wednesday).
Best, Stefan ________________________________________ Von: Peter Salz [[email protected]] Gesendet: Donnerstag, 3. Oktober 2013 13:50 An: Kislinskiy, Stefan Cc: [email protected] Betreff: Re: [mitk-users] MITK duplicates CT slices on its own Hi Stefan, yes, I load a series of DICOM images and then save the project as an MITK file. The slice duplication seems to occur after several save / load iterations. Note that when I export the segmentations into NRRD files, they have the right size. Kind regards, Peter Salz Here is the output of the detail section: Image (0x12d280c70) Dimension: 3 Dimensions: 512 512 127 Channel: Unnamed [scalar] PixelType: scalar BitsPerElement: 2 ComponentType: short NumberOfComponents: 1 BitsPerComponent: 16 TimeSlicedGeometry: TimeSlicedGeometry (0x12d284740) EvenlyTimed: 1 TimeSteps: 1 GetGeometry3D(0): SlicedGeometry3D (0x12d2832a0) IndexToWorldTransform: Matrix: 0.683594 0 0 0 0.683594 0 0 0 3 Offset: [-202, -193, -428] Center: [0, 0, 0] Translation: [-202, -193, -428] Inverse: 1.46286 0 0 0 1.46286 0 0 0 0.333333 Scale : 1 1 1 BoundingBox: ( 0,512 0,512 0,127 ) Origin: [-202, -193, -428] ImageGeometry: 1 Spacing: [0.683594, 0.683594, 3] TimeBounds: [-3.40282e+38, 3.40282e+38] EvenlySpaced: 1 DirectionVector: [0, 0, 1] Slices: 127 GetGeometry2D(0): PlaneGeometry (0x12d27be70) IndexToWorldTransform: Matrix: 0.683594 0 0 0 0.683594 0 0 0 3 Offset: [-202, -193, -428] Center: [0, 0, 0] Translation: [-202, -193, -428] Inverse: 1.46286 0 0 0 1.46286 0 0 0 0.333333 Scale : 1 1 1 BoundingBox: ( 0,512 0,512 0,1 ) Origin: [-202, -193, -428] ImageGeometry: 1 Spacing: [0.683594, 0.683594, 3] TimeBounds: [-3.40282e+38, 3.40282e+38] ScaleFactorMMPerUnitX: 0.683594 ScaleFactorMMPerUnitY: 0.683594 Normal: [0, 0, 3] Am 02.10.2013 um 11:38 schrieb "Kislinskiy, Stefan" <[email protected]<mailto:[email protected]>>: Hi Peter, did I understand you correctly that you open an unconverted DICOM image, i.e. not a .nrrd file? Can we have a look at the details of your DICOM-image (right-click on your image in the data manager and select “Details…”)? Best regards, Stefan Von: Peter Salz [mailto:[email protected]<http://rhrk.uni-kl.de>] Gesendet: Dienstag, 1. Oktober 2013 14:22 An: [email protected]<mailto:[email protected]> Betreff: [mitk-users] MITK duplicates CT slices on its own Hi, I am segmenting several CT datasets with multiple materials. It happened several times that MITK duplicated slices of the dataset: For example, my current dataset has 142 slices, but MITK shows 709, there are 3 or 4 identical slices before the slider moves to the next slice. The most annoying part is, the segmentations are then corrupted, since they are still in the 142 slices range. What happens is that everytime I modify the segmentation, a vector::_M_range_check error occurs (see screenshot). This happens with the precompiled MITK 20013.06 version for Mac OS X 10.8.5 I downloaded from the MITK website. I look forward to hear solutions or tips on how to work around this bug since I really need to continue with my project (my other project is already on hold because of another bug I reported concerning loading and saving DICOM images). Also, many hours of segmentation seem to be wasted, which is really frustrating. Kind regards, Peter Salz <image002.jpg> ------------------------------------------------------------------------------ October Webinars: Code for Performance Free Intel webinars can help you accelerate application performance. Explore tips for MPI, OpenMP, advanced profiling, and more. Get the most from the latest Intel processors and coprocessors. See abstracts and register > http://pubads.g.doubleclick.net/gampad/clk?id=60134791&iu=/4140/ostg.clktrk _______________________________________________ mitk-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/mitk-users
