Hello MITK List,

I am having a interesting problem. I am loading a Track file (trk) and the 
respective accompanying MR datasets and segmentations.

After loading the datasets, all datasets are correctly aligned in the 
stdmultiwidget. 

But for my plugin I need to access the transformation between the datasets and 
I cannot achieve this. There is always some miss calculations. For example, if 
I ask the geometry3D for the bounding box of the dataset, it gives me different 
values comparing to when I get these values from the vtkPolyData inside the 
mitkFiberBundleX. The two returning BB are not the same. 

When I check the details of the Fiber dataset, it is only shown an identiy 
matrix and the BBox, without any transformation. But the BBoxes of the track 
and the MR image are different. So, how does MITK align them?

Also, I do not understand how the colors of the fibers get rendered. As far as 
I have found there is only a 
fib->SetColorCoding(mitk::FiberBundleX::COLORCODING_CUSTOM) (and similar) which 
leads me nowhere. the render functions of geometry only lead me in circles...

Thank you!

Best regards,
Miguel Nunes

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