Hi Arnaud,
1. Is there any error output in the logging view? Can you save the images correctly as .dwi? (.dwi is a renamed nrrd file and contains the gradient information in the header) 2. If you generate a diffusion weighted image with the signal generation and save it as either .nii or .dwi the used gradients will be saved alongside (in bvecs/bvals or the header respectively) Best, Caspar Von: Arnaud Boré [mailto:[email protected]] Gesendet: Mittwoch, 19. August 2015 00:54 An: [email protected] Betreff: [mitk-users] [MITK DI] Dear MITK experts, I've got a couple of questions regarding MITK Diffusion. 1 - When I import a dicom folder and then I try to save the result as a NIFTI file the progress bar stays at 50% and I'm not able to open the file that has been created. I would like as well to extract gradient information (like a bvec bval or .b - mrtrix version), how do I do that ? 2 - When I use signal generation with a specific number of gradients where can I found this table ? I try to generate a phantom and run some analyses outside MITK so I would like to create a 4D nifti file and a gradient table. Thank you in advance for your help.
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