Hi, I'm using the MitkTensorReconstruction command line tool to generate a dti (nrrd) file. I have successfully read the dti file tensors into another piece of code I'm writing.
The tensors in the dti file have the following form: [volume width x volume height x volume depth x 6], where 6 is the number of scalars necessary to completely define the diffusion tensor. My question is: what sequence should I use to reconstruct the full 3x3 diffusion tensor back from the 6 elements vector? I have tried the following order: [1 2 3] [2 4 5] [3 5 6] but it's not working. This was based on checking the source code of the tensor reconstruction miniapps to reverse the tensor serialization. Your help is greatly appreciated. Mohammad
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