Hi Hongzhi, I know that we are building GDCM by ourself and we are passing it to the ITK build in order to avoid a duplicate GDCM build. I am not sure if your setup could cause troubles in this case.
Another reason could be that you first used the regular superbuild and afterwards you passed an external ITK / VTK. This could in fact cause some issues since the ITK / VTK libraries and include directories are installed into ep/lib and ep/include. If you update these toolkits you will usually have to remove the former libraries and include dirs to avoid linker or compile errors. You could build ITK and VTK separately and set the according build directories via the cmake variables ITK_DIR and VTK_DIR before starting the actual superbuild. Or you can change the ITK / VTK source tar balls in the CMakeExternals/(ITK/VTK).cmake that are used for the superbuild to the ones you want to use. Hope this helps! Andreas Am 27/11/15 18:35 schrieb "Hongzhi Lan" unter <hong...@stanford.edu>: >Hi Andreas, > >I use MITK 2015.05.2. > >First I have a MITK super build at MITK-superbuild. No problem for this. > >Then I build vtk itk separately. The source code for vtk itk is from >MITK-superbuild/ep/src/VTK and ITK. The build configuration is the same >as the MITK siperbuild. The only difference is itk uses its own gdcm not >system gdcm. Then I pass my vtk itk build directories to MITK build. > >Thanks! >Hongzhi > > >> On Nov 27, 2015, at 3:49 AM, Fetzer, Andreas >><a.fet...@dkfz-heidelberg.de> wrote: >> >> Hi Hongzhi, >> >> how are you building these external libraries? It is important to use >>the same build configuration like it is done in the superbuild. >> Are you passing the related source files to the superbuild or do you >>build them separately and then pass the build directories to the MITK >>build. >> >> Please note also that with MITK 2015.05.2 we already use ITK 4.7.1 >> What MITK version are you using? >> >> Regards, >> Andreas >> >> >> >> >> Von: Hongzhi Lan <hong...@stanford.edu<mailto:hong...@stanford.edu>> >> Datum: Friday 27 November 2015 04:29 >> An: >>"mitk-users@lists.sourceforge.net<mailto:mitk-users@lists.sourceforge.net >>>" >>><mitk-users@lists.sourceforge.net<mailto:mitk-us...@lists.sourceforge.ne >>>t>> >> Betreff: [mitk-users] MITK build using external ITK >> >> >> Hi, >> >> >> I used MITK superbuild, which was very convenient. Now I'm trying to >>build MITK with some external such as VTK6.2.0, ITK4.7.1, CTK ect , but >>there are some issues. Those issues never happened in the superbuild. >>Can I get some help to deal with these issues? VTK ITK source code is >>from MITK website. I use Ubuntu 14.04 and gcc 4.8.4. >> >> >> Thanks! >> >> Hongzhi >> >> >> 1. First error is as below: >> >> -------------------------------------------------------------- >> >> In file included from >>/home/hongzhi/SourceCode/From_MITK/ITK/Modules/ThirdParty/VNL/src/vxl/vcl >>/vcl_compiler.h:250:0, >> from >>/home/hongzhi/SourceCode/From_MITK/ITK/Modules/ThirdParty/VNL/src/vxl/vcl >>/vcl_limits.h:5, >> from >>/home/hongzhi/SourceCode/From_MITK/ITK/Modules/Core/Common/include/itkNum >>ericTraits.h:45, >> from >>/home/hongzhi/SourceCode/From_MITK/ITK/Modules/Core/Common/include/itkVec >>torContainer.hxx:22, >> from >>/home/hongzhi/SourceCode/From_MITK/ITK/Modules/Core/Common/include/itkVec >>torContainer.h:358, >> from >>/home/hongzhi/SourceCode/MITK-2015.05.2/Modules/Core/include/mitkDataStor >>age.h:24, >> from >>/home/hongzhi/SourceCode/MITK-2015.05.2/Modules/Core/include/mitkBaseRend >>erer.h:20, >> from >>/home/hongzhi/SourceCode/MITK-2015.05.2/Modules/Core/include/mitkMapper.h >>:22, >> from >>/home/hongzhi/SourceCode/MITK-2015.05.2/Modules/Core/include/mitkCoreObje >>ctFactoryBase.h:27, >> from >>/home/hongzhi/SourceCode/MITK-2015.05.2/Modules/Core/src/mitkCoreObjectFa >>ctoryBase.cpp:17: >> >>/home/hongzhi/SourceCode/From_MITK/ITK/Modules/ThirdParty/VNL/src/vxl/cor >>e/vnl/vnl_numeric_traits.h:387:27: error: Œconstexpr¹ needed for >>in-class initialization of static data member Œconst float >>vnl_numeric_traits<float>::zero¹ of non-integral type [-fpermissive] >> static const float zero VCL_STATIC_CONST_INIT_FLOAT_DECL(0.0F); >> ^ >> >>/home/hongzhi/SourceCode/From_MITK/ITK/Modules/ThirdParty/VNL/src/vxl/cor >>e/vnl/vnl_numeric_traits.h:389:26: error: Œconstexpr¹ needed for >>in-class initialization of static data member Œconst float >>vnl_numeric_traits<float>::one¹ of non-integral type [-fpermissive] >> static const float one VCL_STATIC_CONST_INIT_FLOAT_DECL(1.0F); >> ^ >> >>/home/hongzhi/SourceCode/From_MITK/ITK/Modules/ThirdParty/VNL/src/vxl/cor >>e/vnl/vnl_numeric_traits.h:391:29: error: Œconstexpr¹ needed for >>in-class initialization of static data member Œconst float >>vnl_numeric_traits<float>::maxval¹ of non-integral type [-fpermissive] >> static const float maxval >>VCL_STATIC_CONST_INIT_FLOAT_DECL(3.40282346638528860e+38F); >> ^ >> >>/home/hongzhi/SourceCode/From_MITK/ITK/Modules/ThirdParty/VNL/src/vxl/cor >>e/vnl/vnl_numeric_traits.h:410:28: error: Œconstexpr¹ needed for >>in-class initialization of static data member Œconst double >>vnl_numeric_traits<double>::zero¹ of non-integral type [-fpermissive] >> static const double zero VCL_STATIC_CONST_INIT_FLOAT_DECL(0.0); >> ^ >> >>/home/hongzhi/SourceCode/From_MITK/ITK/Modules/ThirdParty/VNL/src/vxl/cor >>e/vnl/vnl_numeric_traits.h:412:27: error: Œconstexpr¹ needed for >>in-class initialization of static data member Œconst double >>vnl_numeric_traits<double>::one¹ of non-integral type [-fpermissive] >> static const double one VCL_STATIC_CONST_INIT_FLOAT_DECL(1.0); >> ^ >> >>/home/hongzhi/SourceCode/From_MITK/ITK/Modules/ThirdParty/VNL/src/vxl/cor >>e/vnl/vnl_numeric_traits.h:414:30: error: Œconstexpr¹ needed for >>in-class initialization of static data member Œconst double >>vnl_numeric_traits<double>::maxval¹ of non-integral type [-fpermissive] >> static const double maxval >>VCL_STATIC_CONST_INIT_FLOAT_DECL(1.7976931348623157E+308); >> ^ >> >>/home/hongzhi/SourceCode/From_MITK/ITK/Modules/ThirdParty/VNL/src/vxl/cor >>e/vnl/vnl_numeric_traits.h:433:33: error: Œconstexpr¹ needed for >>in-class initialization of static data member Œconst long double >>vnl_numeric_traits<long double>::zero¹ of non-integral type >>[-fpermissive] >> static const long double zero VCL_STATIC_CONST_INIT_FLOAT_DECL(0.0); >> ^ >> >>/home/hongzhi/SourceCode/From_MITK/ITK/Modules/ThirdParty/VNL/src/vxl/cor >>e/vnl/vnl_numeric_traits.h:435:32: error: Œconstexpr¹ needed for >>in-class initialization of static data member Œconst long double >>vnl_numeric_traits<long double>::one¹ of non-integral type [-fpermissive] >> static const long double one VCL_STATIC_CONST_INIT_FLOAT_DECL(1.0); >> ^ >> >>/home/hongzhi/SourceCode/From_MITK/ITK/Modules/ThirdParty/VNL/src/vxl/cor >>e/vnl/vnl_numeric_traits.h:437:35: error: Œconstexpr¹ needed for >>in-class initialization of static data member Œconst long double >>vnl_numeric_traits<long double>::maxval¹ of non-integral type >>[-fpermissive] >> static const long double maxval >>VCL_STATIC_CONST_INIT_FLOAT_DECL(1.7976931348623157E+308); >> >> >> 2. If the external ITK has vtkglue, the second error appears: >> >>------------------------------------------------------------------------- >>------ >> <command-line>:0:0: error: "vtkRenderingCore_AUTOINIT" redefined >>[-Werror] >> <command-line>:0:0: note: this is the location of the previous >>definition >> >> I found MITKCore privately use/link all ITK modules, which include >>ITKVtkGlue. Someone already mentioned in mailing list, but no solution >>provided. >> MITK-build/Modules/Core/CMakeFiles/MitkCore.dir/DependInfo.cmake >>includes: >> >> >>"vtkRenderingCore_AUTOINIT=3(vtkInteractionStyle,vtkRenderingFreeType,vtk >>RenderingOpenGL)" >> >>"vtkRenderingCore_AUTOINIT=4(vtkInteractionStyle,vtkRenderingFreeType,vtk >>RenderingFreeTypeOpenGL,vtkRenderingOpenGL)" //from >> >> I believe the first is from ITKVtkglue, the second is from VTK. I >>wonder how to solve this conflict. >> >> >> >> >> >> >> >> >> >>------------------------------------------------------------------------- >>----- >> _______________________________________________ >> mitk-users mailing list >> mitk-users@lists.sourceforge.net >> https://lists.sourceforge.net/lists/listinfo/mitk-users ------------------------------------------------------------------------------ Go from Idea to Many App Stores Faster with Intel(R) XDK Give your users amazing mobile app experiences with Intel(R) XDK. Use one codebase in this all-in-one HTML5 development environment. Design, debug & build mobile apps & 2D/3D high-impact games for multiple OSs. http://pubads.g.doubleclick.net/gampad/clk?id=254741911&iu=/4140 _______________________________________________ mitk-users mailing list mitk-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/mitk-users
