Hi Alex, everything looks fine. The data is displayed in the reference system defined by the transformation matrices that are usually saved with the data, which is what we call the "world coordinate system". In contrast, typical DICOM viewers will show slices of the pure data without any geometrical information (the "index coordinate system"). To do the same in MITK, simply right-click on your data object and select "Reinit". Hope that helps!
Best, Jens -----Ursprüngliche Nachricht----- Von: Alexander Kuznetsov [mailto:alexander.ev.kuznet...@gmail.com] Gesendet: Dienstag, 12. Juli 2016 10:56 An: mitk-users@lists.sourceforge.net Betreff: [mitk-users] Rotated MRI image in MITK Hello. I have some problem with loading MRI image in MITK. Look like, image is rotated around Y axis, so the first and the last slices on axial view are cropped, see attached image. At the same time, the same image in OsiriX and RadiAnt looks well and there is no cropping. So far I pinned the problem down to the function template <typename itkImageType> void InitializeByItk(const itkImageType* itkimage, int channels = 1, int tDim = -1, int sDim=-1) { ... // access direction of itk::Imagm_PixelType = new mitk::PixelType(type);e and include spacing const typename itkImageType::DirectionType & itkdirection = itkimage->GetDirection(); MITK_DEBUG << "ITK direction " << itkdirection; mitk::Matrix3D matrix; matrix.SetIdentity(); unsigned int j, itkDimMax3 = (m_Dimension >= 3? 3 : m_Dimension); // check if spacing has no zero entry and itkdirection has no zero columns bool itkdirectionOk = true; mitk::ScalarType columnSum; ... Matrix set up ... ... } If I set up itkdirectionOk = false, image is loaded as expected. Is it some known problem of MITK? Is there any proper work-around for this issue? Regards, Alex. ------------------------------------------------------------------------------ What NetFlow Analyzer can do for you? Monitors network bandwidth and traffic patterns at an interface-level. Reveals which users, apps, and protocols are consuming the most bandwidth. Provides multi-vendor support for NetFlow, J-Flow, sFlow and other flows. Make informed decisions using capacity planning reports.http://sdm.link/zohodev2dev _______________________________________________ mitk-users mailing list mitk-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/mitk-users
