Hi Stephan, please keep the discussion on the list, so others can chime in.
Which version of MITK are you using? One of the releases? A self-build one? If you save the image as described by me as .nrrd file and open it in a text editor, what does the “space origin: (x,y,z)” line say? Does it match the corresponding origin if you right click on the transformed image and select “Details”? Best, Caspar Von: Zwaard, S. van der [mailto:s.vander.zwa...@vu.nl] Gesendet: Mittwoch, 17. August 2016 13:53 An: Goch, Caspar Jonas Betreff: Re: [mitk-users] save transformed images after manual rigid registration Hi Caspar, Thank you for your reply. That is exactly what I have done. Although the project can be saved with the transformed images, if separate images are saved they are not transformed. Since I’d like to analyse the transformed volumes in another program this does not fix things for me… Kind regards, Stephan van der Zwaard, PhD-student [Das Bild wurde vom Absender entfernt.] +31 (0)20 5988504 [Das Bild wurde vom Absender entfernt.] s.vander.zwa...@vu.nl<mailto:s.vander.zwa...@vu.nl> [Das Bild wurde vom Absender entfernt.] Department of Human Movement Sciences | VU University Amsterdam Van der Boechorststraat 9 | 1081 BT Amsterdam | Room A621 Op 16 aug. 2016, om 18:39 heeft Goch, Caspar Jonas <c.g...@dkfz-heidelberg.de<mailto:c.g...@dkfz-heidelberg.de>> het volgende geschreven: Hi Stephan, our old registration plugins have some issues and will be replaced soon. However, for me using the manual registration seems to work fine with the following workflow: Load image Moving Load image Fixed Open rigid registration view and tick the Manual Registraion box Select Fixed and Moving in the datamanager (in that order) Move any (number of) slider(s) Left click into the datamanager onto Moving to select only it Right click on Moving and select “Save” The resulting file is transformed for me. Does this help you? Best, Caspar Von: Zwaard, S. van der [mailto:s.vander.zwa...@vu.nl] Gesendet: Montag, 15. August 2016 16:30 An: mitk-users@lists.sourceforge.net<mailto:mitk-users@lists.sourceforge.net> Betreff: [mitk-users] save transformed images after manual rigid registration Dear all, I have multiple 3D images that are not properly aligned. This can be solved by manual registration under the rigid registration menu. However, I cannot save the transformed images after alignment and therefore cannot align more than 2 images (transformation of the first images may be undone when loading a new image). Does anyone know how to save transformed images after manual registration alignment? Kind regards, Stephan van der Zwaard, PhD-student +31 (0)20 5988504 s.vander.zwa...@vu.nl<mailto:s.vander.zwa...@vu.nl> Department of Human Movement Sciences | VU University Amsterdam Van der Boechorststraat 9 | 1081 BT Amsterdam | Room A621
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